Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A15
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365...    95   8e-20
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607...    94   1e-19
01_02_0013 + 10162478-10163581                                         29   3.6  
10_02_0015 + 4243218-4243420,4243553-4243745,4243818-4243898,424...    29   4.7  

>02_03_0270 +
           17135464-17135467,17135583-17135655,17136253-17136583,
           17136916-17136969,17137219-17137394,17137607-17137685
          Length = 238

 Score = 94.7 bits (225), Expect = 8e-20
 Identities = 43/52 (82%), Positives = 48/52 (92%)
 Frame = +3

Query: 201 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 356
           R RGGN K+RALRLDTGN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLV+
Sbjct: 48  RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVK 99



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 29/42 (69%), Positives = 32/42 (76%)
 Frame = +2

Query: 62  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR 187
           MGISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   +
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNK 42



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 23/35 (65%), Positives = 31/35 (88%)
 Frame = +2

Query: 569 GXLLACVASXPGQCGRADGYILQGXELQFYLRXIK 673
           G LLAC++S PGQCGRADGYIL+G EL+FY++ ++
Sbjct: 195 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 229



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
 Frame = +1

Query: 349 LFKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT--EAEEAI 471
           L K+AIV VDA PF+QWY +HY + +GRKK A     +AE A+
Sbjct: 97  LVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHAL 139


>04_03_0510 -
           16659486-16659564,16659772-16659947,16660464-16660797,
           16661564-16661636,16661780-16661783
          Length = 221

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 43/52 (82%), Positives = 48/52 (92%)
 Frame = +3

Query: 201 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 356
           R RGGN K+RALRLDTGN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLV+
Sbjct: 48  RVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVK 99



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 29/42 (69%), Positives = 32/42 (76%)
 Frame = +2

Query: 62  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR 187
           MGISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   +
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNK 42



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 23/35 (65%), Positives = 31/35 (88%)
 Frame = +2

Query: 569 GXLLACVASXPGQCGRADGYILQGXELQFYLRXIK 673
           G LLAC++S PGQCGRADGYIL+G EL+FY++ ++
Sbjct: 178 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 212



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
 Frame = +1

Query: 349 LFKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKRXQKTAR 504
           L K+AIV VDA PF+QWY +HY + +GRKK         A+  E E A    K+     R
Sbjct: 97  LVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVR 156

Query: 505 XYLARQRLAKVXGALXEQFHTG 570
               RQ+   +   + EQF +G
Sbjct: 157 KLEKRQQTRTLDSHIEEQFGSG 178


>01_02_0013 + 10162478-10163581
          Length = 367

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 214 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 351
           E +S  RC   P+   G R  + A   SL + ++HL   +C  RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283


>10_02_0015 +
           4243218-4243420,4243553-4243745,4243818-4243898,
           4244267-4244377,4244921-4245211,4245301-4245363,
           4245571-4245636,4245761-4245979
          Length = 408

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 508 YLARQRLAKVXGALXEQFHTGAFAGLRGESPRSVW 612
           Y++ +R + V GAL  +F+ GAF  +   +P   W
Sbjct: 75  YISSRRPSTVQGALLRKFYPGAFGLVECRTPALTW 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,778,547
Number of Sequences: 37544
Number of extensions: 415544
Number of successful extensions: 1216
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)