Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A15
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)               96   3e-20
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           31   0.91 
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_50214| Best HMM Match : RNA_capsid (HMM E-Value=9.8)                28   8.5  
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 44/54 (81%), Positives = 47/54 (87%)
 Frame = +3

Query: 201 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQEC 362
           R+RGGN K+RA RLDT NFSWGSE  TRK RIIDVVYNASNNELVRTKTLV+ C
Sbjct: 31  RTRGGNRKFRAFRLDTENFSWGSESCTRKARIIDVVYNASNNELVRTKTLVKNC 84



 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 41/76 (53%), Positives = 51/76 (67%)
 Frame = +1

Query: 343 RPLFKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRXQKTARXYLARQ 522
           + L KN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+NKKR     R   AR+
Sbjct: 78  KTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCTRKLEARK 137

Query: 523 RLAKVXGALXEQFHTG 570
             AKV   + EQF TG
Sbjct: 138 ANAKVAPGMEEQFVTG 153



 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = +2

Query: 569 GXLLACVASXPGQCGRADGYILQGXELQFYLRXIKSXXA 685
           G L ACV+S PGQ GR DGYIL+G EL+FY++ +K+  A
Sbjct: 153 GRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKA 191



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +2

Query: 119 PIRKKRKYELGRPAANTRLGPQRIH 193
           P+R KRK+ELGRP ANT++G +RIH
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIH 28


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 14/52 (26%), Positives = 32/52 (61%)
 Frame = +3

Query: 201 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 356
           ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +N E +    +V+
Sbjct: 44  KAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVK 95


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 95  RATGGKRAPIRKKRKYELGRPAANTRLGP 181
           R  GG R P+++   +E  +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_50214| Best HMM Match : RNA_capsid (HMM E-Value=9.8)
          Length = 468

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +2

Query: 26  GILK-ICFFDPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTR---LGPQRIH 193
           GI+K +  F P+++G SR +    R + GKR P     K E  RP AN     L   R++
Sbjct: 77  GIIKPVRLFYPSELG-SRQN-ATDRLSEGKRKPATDDTKQETARPTANQHKYMLLKCRVN 134

Query: 194 -SXSFTWWKY 220
            S S TW ++
Sbjct: 135 MSNSCTWTEF 144


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 195  PXRSRGGNTKYRALRLDTGNFS 260
            P   +GGN +YR +  DTG FS
Sbjct: 1643 PDTGQGGNVEYRIVSPDTGKFS 1664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,517,463
Number of Sequences: 59808
Number of extensions: 436541
Number of successful extensions: 1041
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)