Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_A15
(858 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 100 3e-21
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.79
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.79
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.79
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.79
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.79
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.79
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 9.8
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 99.5 bits (237), Expect = 3e-21
Identities = 51/112 (45%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = +1
Query: 277 QLAKPVSLMLCIMHLTMNWCVQ-RPLFKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 453
Q + ++ + + T N V+ + L K AI+ VDA PFRQWYE+HY LPL RKK AKL+
Sbjct: 71 QTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLS 130
Query: 454 EAEEAIINKKRXQKTARXYLARQRLAKVXGALXEQFHTGAFAGLRGESPRSV 609
E + AI+NKKR T + Y RQ+ A V L EQF+TG SP V
Sbjct: 131 EEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQV 182
Score = 92.7 bits (220), Expect = 3e-19
Identities = 41/52 (78%), Positives = 48/52 (92%)
Frame = +3
Query: 201 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 356
R+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLV+
Sbjct: 47 RTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVK 98
Score = 62.9 bits (146), Expect = 3e-10
Identities = 27/43 (62%), Positives = 32/43 (74%)
Frame = +2
Query: 62 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRI 190
MGISRD WHKR TG + KKRK+ELGRPAANT++G R+
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRV 43
Score = 51.2 bits (117), Expect = 9e-07
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +2
Query: 569 GXLLACVASXPGQCGRADGYILQGXELQFYLRXIKSXXA 685
G LLA ++S PGQ G+A+GYIL+G EL FYLR I++ A
Sbjct: 169 GRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKA 207
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 231 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 335
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 231 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 335
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 231 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 335
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 231 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 335
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 231 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 335
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 231 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 335
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3
Query: 334 TNSLLDALYTTSMIRVLRV 278
TNSL+DA+YTT+ + L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,309,688
Number of Sequences: 27780
Number of extensions: 319883
Number of successful extensions: 934
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -