Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A15
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   114   9e-28
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   8.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   8.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   8.3  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  114 bits (275), Expect = 9e-28
 Identities = 53/76 (69%), Positives = 59/76 (77%)
 Frame = +1

Query: 343 RPLFKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRXQKTARXYLARQ 522
           + L KNAIV +DATPFRQWYE HY LPLGRK+GAKLTEAEE ++NKKR +K    Y ARQ
Sbjct: 94  KTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQ 153

Query: 523 RLAKVXGALXEQFHTG 570
           R AKV  AL EQF TG
Sbjct: 154 RFAKVEPALEEQFATG 169



 Score =  105 bits (253), Expect = 4e-25
 Identities = 48/52 (92%), Positives = 51/52 (98%)
 Frame = +3

Query: 201 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 356
           R+RGGN KYRALRLDTGNFSWGSEC+TRKTRIIDVVYNASNNELVRTKTLV+
Sbjct: 47  RTRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVK 98



 Score = 96.3 bits (229), Expect = 3e-22
 Identities = 41/45 (91%), Positives = 44/45 (97%)
 Frame = +2

Query: 62  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 196
           MGISRDHWHKRRATGGKR PIRKKRK+ELGRPAANT+LGPQRIH+
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHT 45



 Score = 62.9 bits (146), Expect = 4e-12
 Identities = 26/39 (66%), Positives = 32/39 (82%)
 Frame = +2

Query: 569 GXLLACVASXPGQCGRADGYILQGXELQFYLRXIKSXXA 685
           G +LAC++S PGQCGR DGYIL+G EL+FY+R IKS  A
Sbjct: 169 GRVLACISSRPGQCGREDGYILEGKELEFYMRRIKSKKA 207


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 405 LIPLPEWSCIYYNNC 361
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 405 LIPLPEWSCIYYNNC 361
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 405 LIPLPEWSCIYYNNC 361
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,347
Number of Sequences: 438
Number of extensions: 3992
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)