Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A15
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...    97   1e-20
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...    94   9e-20
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    30   2.3  
At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical...    29   3.0  
At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical...    29   3.0  
At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2)...    29   4.0  
At3g28560.1 68416.m03566 hypothetical protein similar to mitocho...    28   6.9  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 43/52 (82%), Positives = 49/52 (94%)
 Frame = +3

Query: 201 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 356
           R RGGN K+RALRLDTGN+SWGSE +TRKTR++DVVYNASNNELVRTKTLV+
Sbjct: 48  RVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVK 99



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 28/42 (66%), Positives = 32/42 (76%)
 Frame = +2

Query: 62  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR 187
           MGISRD  HKRRATGGK+   RKKRKYE+GR  ANT+L   +
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNK 42



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 24/35 (68%), Positives = 31/35 (88%)
 Frame = +2

Query: 569 GXLLACVASXPGQCGRADGYILQGXELQFYLRXIK 673
           G LLAC++S PGQCGRADGYIL+G EL+FY++ I+
Sbjct: 180 GRLLACISSRPGQCGRADGYILEGKELEFYMKKIQ 214



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
 Frame = +1

Query: 343 RPLFKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT-----EAEEAII----NKKRXQ 492
           + L K+AIV VDA PF+QWY SHY + LGR KK A  T     E EEA +      K+  
Sbjct: 95  KTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSN 154

Query: 493 KTARXYLARQRLAKVXGALXEQFHTG 570
              R   +RQ    +   + +QF +G
Sbjct: 155 HLLRKIASRQEGRSLDSHIEDQFASG 180


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 43/52 (82%), Positives = 47/52 (90%)
 Frame = +3

Query: 201 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 356
           R RGGN K+RALRLDTGNFSWGSE  TRKTRI+DV YNASNNELVRT+TLV+
Sbjct: 48  RVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVK 99



 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 29/42 (69%), Positives = 32/42 (76%)
 Frame = +2

Query: 62  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR 187
           MGISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   +
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNK 42



 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 24/35 (68%), Positives = 31/35 (88%)
 Frame = +2

Query: 569 GXLLACVASXPGQCGRADGYILQGXELQFYLRXIK 673
           G LLAC+AS PGQCGRADGYIL+G EL+FY++ ++
Sbjct: 166 GRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 200



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 29/74 (39%), Positives = 37/74 (50%)
 Frame = +1

Query: 349 LFKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRXQKTARXYLARQRL 528
           L K+AIV VDA PF+Q Y  HY + +GRKK  +    EE     K+     R    RQ  
Sbjct: 97  LVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEG 152

Query: 529 AKVXGALXEQFHTG 570
             +   L EQF +G
Sbjct: 153 RALDSHLEEQFSSG 166


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 25/85 (29%), Positives = 40/85 (47%)
 Frame = -3

Query: 424 EATYNATHTTA*MELHLLQQLHS*TRVFVRTNSLLDALYTTSMIRVLRVEHSDPQEKLPV 245
           + ++N  H+   +E   L    + +   +R+ S LD+L     +RVL V H+    +LPV
Sbjct: 552 DLSHNELHSAEGLEAMQLLCCLNLSHNRIRSFSALDSLRHLKQLRVLDVSHNHICGELPV 611

Query: 244 SRRSARYLVFPPRERXGVDTLRTEP 170
              + RYL   P    G +T R  P
Sbjct: 612 D--TTRYLCSSPLSNSG-ETGREVP 633


>At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical to
           G-box binding factor 3 (GBF3) SP:P42776 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 359

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 156 PLQTPGSVLSVSTPXRSRG 212
           PL TPG++LS+ TP +S G
Sbjct: 108 PLTTPGTLLSIDTPTKSTG 126


>At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical to
           G-box binding factor 3 (GBF3) SP:P42776 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 382

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 156 PLQTPGSVLSVSTPXRSRG 212
           PL TPG++LS+ TP +S G
Sbjct: 108 PLTTPGTLLSIDTPTKSTG 126


>At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2) /
           gibberellin-responsive protein 2 identical to SP|P46688
           Gibberellin-regulated protein 2 precursor {Arabidopsis
           thaliana}
          Length = 99

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +3

Query: 336 RTKTLVQECN-CCSRCNSI 389
           RTK  ++ CN CCSRCN +
Sbjct: 54  RTKLCLRACNSCCSRCNCV 72


>At3g28560.1 68416.m03566 hypothetical protein similar to
           mitochondrial protein-like protein (GI:11559424)
           [Cucumis sativus]
          Length = 257

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 50  DPTKMGISRDHWHKRRATGGK--RAPIRKKRKYELGRPAANTRLGPQR 187
           DP K    ++ W KRR   G+  R   R K++ +LGR     R+  +R
Sbjct: 209 DPEKNKAEKEAWKKRRRKRGRLLRKKRRTKQRRKLGRRRRKQRMQRRR 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,547,803
Number of Sequences: 28952
Number of extensions: 302633
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)