Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A14
         (869 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 

>SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +1

Query: 337 ASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQ 516
           +S A W Y +N+T EN  K  Q  L  S   + A ++ K +      + T RR  K  ++
Sbjct: 46  SSEASWNYATNLTVENLNKRTQASLTYSAFLEEARKKAKKFDLTKLSNDT-RRQIKMVTE 104

Query: 517 LGVAALPDDQFQALMRTVSG-MESNYPXAKI 606
              A+  D   Q  +  V G M+  Y   K+
Sbjct: 105 --TASSSDKDVQKTLNDVEGKMDQIYGSGKV 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,564,014
Number of Sequences: 59808
Number of extensions: 373878
Number of successful extensions: 989
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)