Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A11
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.054
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.17 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.67 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    28   1.5  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   2.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = -3

Query: 755 GXGGXPXXRGXXPGPGGFXXXXXXXGGGXXGGGGG 651
           G GG P   G   GPGGF       GGG  G GGG
Sbjct: 225 GFGGGPG--GFEGGPGGFGGGPGGFGGGLGGFGGG 257



 Score = 32.3 bits (70), Expect = 0.094
 Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
 Frame = -3

Query: 797 GVXPXXPQGXXXXWGXGGXPXXRGXXPG----PGGFXXXXXXXGGGXXGGGGG 651
           G  P  P G     G GG     G   G    PGGF       GGG  G GGG
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -1

Query: 757 GGXGVXPXXGGXPPAPGAXGXXGXXXGXGXXXGXGGXXXG 638
           G  G     GG PP PG  G  G   G G   G  G   G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGG 228



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = -3

Query: 755 GXGGXPXXRGXXPGPGGFXXXXXXXGG-GXXGGGGGXXXG 639
           G GG P   G   G GGF       GG G  GGG G   G
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEG 235



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = -3

Query: 755 GXGGXPXXRGXXPGPGGFXXXXXXXGGGXXGGGGG 651
           G  G P   G   GPGGF       GGG  G GGG
Sbjct: 232 GFEGGPG--GFGGGPGGFGGGLGGFGGGPGGFGGG 264


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 278 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 171
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = +1

Query: 652 PPPPPXXPPPXXXXXXXKPPGPGXSPLXXGXPPXPXXHXXPWGXLGXTPP 801
           PPPPP    P         P P  +P+  G PP P     P G  G  PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPP--APIMGGPPPPP----PPPGVAGAGPP 776



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +1

Query: 640 PXXXPPPPPXXPPPXXXXXXXKPPGPGXSPLXXGXPPXP 756
           P   P P P  PPP        PP P       G PP P
Sbjct: 742 PTPAPAPIPV-PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 215 LKSFH-LGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPIQYRSTRTLRMIKS 39
           L+S H L S  + T PR   N    +    K + P  ++   F+I + Y  TR L  I++
Sbjct: 291 LQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRILPAIQN 350


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +1

Query: 658 PPPXXPPPXXXXXXXKPPGPGXSPLXXGXPPXPXXH 765
           P P  P P        PP P  S +    PP P  H
Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTH 764


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 640 PXXXPPPPPXXPPPXXXXXXXKPPGP 717
           P   PPPPP  PPP        PP P
Sbjct: 5   PPGNPPPPP--PPPGFEPPSQPPPPP 28


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +1

Query: 640 PXXXPPPPPXXPPPXXXXXXXKPPGPGXSPLXXGXPPXP 756
           P   PP P   PPP       K P P    L    PP P
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSP-PSAPSLPSAVPPMP 198


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +1

Query: 655 PPPPXXPPPXXXXXXXKPPGPGXSPLXXGXPPXP 756
           PPPP  PPP        P G G S      PP P
Sbjct: 311 PPPP--PPPSRRNRGKPPIGNGSSNSSLPPPPPP 342


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
 Frame = +1

Query: 652  PPPPP--XXPPPXXXXXXXKPPGPGXSPLXXGXPP 750
            PPPPP    PPP        PP     PL     P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,024
Number of Sequences: 5004
Number of extensions: 51897
Number of successful extensions: 215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)