Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A10
         (887 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.60 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   7.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.8  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 573 SEGDYNVMVMELLGPSLEDLFNFCSRRFSLK 665
           S   YN+  M   G ++EDL +FC   +S+K
Sbjct: 423 SRDSYNLAGM---GETIEDLLHFCRTMYSMK 450


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 191 VNFL*KNLYF*LK*VANWTYLQAETHGARNQIFV 90
           + F+ K L F +K V+N+T  Q++ H     +FV
Sbjct: 466 IEFIRKVLEFDVKCVSNYTKQQSKIHLIVRSVFV 499


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 448 VTMFVPKYISPKDPEPIFRPSRY 380
           V +F+P       PE IFRP+ Y
Sbjct: 490 VKIFLPFRFLFYKPEDIFRPNTY 512


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 677 SSRXTNXPH*GHTLQKFYP*RHQ 745
           +++  N  H GH +Q+ +P  HQ
Sbjct: 158 TTQSMNNHHMGHHMQEQHPQHHQ 180


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 677 SSRXTNXPH*GHTLQKFYP*RHQ 745
           +++  N  H GH +Q+ +P  HQ
Sbjct: 160 TTQSMNNHHMGHHMQEQHPQHHQ 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,705
Number of Sequences: 336
Number of extensions: 3896
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)