Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A10
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                28   0.099
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   1.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    25   1.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   2.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.5  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 0.099
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 1/135 (0%)
 Frame = +3

Query: 363 LRVGNKYRLGRKIGSGSFGDIYLGTNIVTREEVAIKLECIKTRHPQLHIESKFYKLMQGR 542
           L+ G   + G  +GSG FG +Y    +   E+VA K+  I+T      + S+ +      
Sbjct: 61  LKDGFPIKCGTFLGSGGFGIVYKA--LYKGEQVAAKI--IQTEKYSNMLNSEKHASFLKH 116

Query: 543 VGIPAIKWCGSEGDYNVMVMELLGPSLEDLFNFCSRRFSLKTVXXXXXXXXS-RIEDIXY 719
             I  +         +++ MEL G +L+   N       +K          +  ++    
Sbjct: 117 SNIVKVLMIEQGASLSLITMELCGTTLQ---NRLDEAILIKNERICILKSITCALQFCHN 173

Query: 720 RNFIHRDIKPDXFLM 764
              +H D+KP   LM
Sbjct: 174 AGIVHADVKPKNILM 188


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +3

Query: 609 LGPSLEDLFNFCSRRFSLK 665
           +G ++EDL +FC + +++K
Sbjct: 452 MGETIEDLLHFCRQMYAMK 470


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 717 YRNFIHRDIKPDXFLMGLXXKG 782
           +   +HRD+KP+  L+    KG
Sbjct: 27  HNGVVHRDLKPENLLLASKAKG 48


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 720 RNFIHRDIKPDXFLM 764
           RN I+RD+KP+  L+
Sbjct: 485 RNIIYRDLKPENLLL 499


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 213 SCCRDYLSKFSVK 175
           +CCR +LSKF  +
Sbjct: 399 NCCRSWLSKFPTR 411


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 213 SCCRDYLSKFSVK 175
           +CCR +LSKF  +
Sbjct: 399 NCCRSWLSKFPTR 411


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 227 FVCI*AVVEIILVNFL*KNLY 165
           F+CI  V  I+L+ F+ +N+Y
Sbjct: 402 FLCISLVYIIMLIIFIPRNIY 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,307
Number of Sequences: 438
Number of extensions: 4413
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)