Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A09
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.20 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +3

Query: 543 PPPPXPXPXPXXXXPPXXXXXXPPXXPXPXPPPPXPP 653
           P    P P P     P       P  P   PPP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 27.1 bits (57), Expect = 0.20
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +3

Query: 546 PPPXPXPXPXXXXPPXXXXXXPPXXPXPXPPPPXPP 653
           P P P P      P       P   P P  PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 543 PPPPXPXPXPXXXXPPXXXXXXPPXXPXPXPPPPXP 650
           P P      P    PP      PP  P   PP   P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 633  PPPPXPPP 656
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 621 PXPXPPPPXP 650
           P P PPPP P
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 627 PXPPPPXPPP 656
           P P PP PPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 612 PXXPXPXPPPP 644
           P  P P PPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 734  PXXAXXXPPPPPP 772
            P      PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 57   SAHQVISTAPLVS*RPPLNLHKLTMNFAKIL 149
            SA  ++ T P     PP+NL    ++ ++IL
Sbjct: 994  SAELIVRTEPQRPAGPPINLEARALSSSEIL 1024


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 57   SAHQVISTAPLVS*RPPLNLHKLTMNFAKIL 149
            SA  ++ T P     PP+NL    ++ ++IL
Sbjct: 990  SAELIVRTEPQRPAGPPINLEARALSSSEIL 1020


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,449
Number of Sequences: 438
Number of extensions: 9626
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)