Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A08
         (828 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.7  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   3.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.8  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 807 PPPPPPP 827
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 799 APXPPPPP 822
           AP PPPPP
Sbjct: 730 APPPPPPP 737


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +3

Query: 372 PPPPXPPPPXXGGGXPPPPPP 434
           PP P P P       P PP P
Sbjct: 250 PPTPKPRPTKVSRRKPRPPRP 270


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 320 PPPXPXPPPPXXPXXXPP 373
           PPP P   PP  P    P
Sbjct: 737 PPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 320 PPPXPXPPPPXXPXXXPP 373
           PPP P   PP  P    P
Sbjct: 629 PPPHPHHQPPRNPVGTNP 646


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 323 PPXPXPPPPXXPXXXPP 373
           PP P  PP   P   PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,453
Number of Sequences: 336
Number of extensions: 2486
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)