Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A08
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.85 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.85 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 375  PPPXPPPPXXG 407
            PPP PPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 807  PPPPPPP 827
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 807  PPPPPPP 827
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 369  PPPPPXPP 392
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 372  PPPPXPPP 395
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 378  PPXPPPPXXGG 410
            PP PPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 608  PXPPPPXPXGG 640
            P PPPP P  G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 798  RXXPPPPPPP 827
            R   PPPPPP
Sbjct: 1351 RQQQPPPPPP 1360



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 605  PPXPPPPXPXG 637
            PP PPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 369 PPPPPXPPPPXXGGGXPPPPPP 434
           PP P   PPP    G PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 369 PPPPPXPPPPXXGGGXPPPPPP 434
           P  P    PP    G PP  PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPP 52



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/18 (50%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
 Frame = +2

Query: 323 PPXPXP-PPPXXPXXXPP 373
           PP P   PPP  P   PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 372 PPPPXPPPPXXGGGXP 419
           PP P PPPP      P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 369 PPPPPXPPPPXXGGG 413
           PP P  PPPP    G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 323 PPXPXPPPPXXPXXXP 370
           PP P PPPP      P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 802 PXPPPPPP 825
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 320 PPPXPXPPPP 349
           P P P PPPP
Sbjct: 339 PKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 396  PXXGGGXPPPPPP 434
            P  G   PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 799  APXPPPPPP 825
            +P PPPPPP
Sbjct: 1856 SPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,362
Number of Sequences: 438
Number of extensions: 5880
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)