Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A07
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.93 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 543 PPPPXXXXXXGGXPPPPP 490
           PPPP      G  PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 543 PPPPXXXXXXGGXPPPPP 490
           PPPP       G PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 543 PPPPXXXXXXGGXPPPPP 490
           PPPP      G  PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 543 PPPPXXXXXXGGXPPPPPXG 484
           P PP      G  PPPPP G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 543 PPPPXXXXXXGGXPPPPPXGXFXXXXKKK 457
           PPPP         PPPPP   +    K K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,373
Number of Sequences: 5004
Number of extensions: 11207
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)