Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_A07
(928 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 31 1.0
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 31 1.0
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 31 1.0
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 31 1.0
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 31 1.3
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 4.0
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 4.0
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 29 5.3
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 29 5.3
SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 7.1
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 31.5 bits (68), Expect = 1.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP GG PPPPP
Sbjct: 198 PPPPPPPGFPGGAPPPPP 215
Score = 29.1 bits (62), Expect = 5.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP G PPPPP
Sbjct: 199 PPPPPPGFPGGAPPPPPP 216
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 31.5 bits (68), Expect = 1.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP GG PPPPP
Sbjct: 663 PPPPPPGGQAGGAPPPPP 680
Score = 29.1 bits (62), Expect = 5.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP G PPPPP
Sbjct: 664 PPPPPGGQAGGAPPPPPP 681
Score = 29.1 bits (62), Expect = 5.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP G PPPPP
Sbjct: 676 PPPPPPPLPGGAAPPPPP 693
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPPXGXFXXXXKKKK 454
PPPP PPPP G F K +K
Sbjct: 689 PPPPPPIGGGAPPPPPPGFGGFANLVKPRK 718
Score = 28.7 bits (61), Expect = 7.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPPXG 484
PPPP PPPPP G
Sbjct: 677 PPPPPPLPGGAAPPPPPPIG 696
Score = 28.7 bits (61), Expect = 7.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -1
Query: 541 PPPXXXXXXGGXPXPPPXGGXFXXXXKKKK 452
PPP G P PPP G F K +K
Sbjct: 689 PPPPPPIGGGAPPPPPPGFGGFANLVKPRK 718
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 31.5 bits (68), Expect = 1.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP GG PPPPP
Sbjct: 318 PPPPPPPPGDGGAPPPPP 335
Score = 29.1 bits (62), Expect = 5.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP G PPPPP
Sbjct: 319 PPPPPPPGDGGAPPPPPP 336
Score = 28.3 bits (60), Expect = 9.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 542 PPPPXXXXXGGGXXPPPP 489
PPPP G G PPPP
Sbjct: 317 PPPPPPPPPGDGGAPPPP 334
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 31.5 bits (68), Expect = 1.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP GG PPPPP
Sbjct: 139 PPPPPIAPATGGPPPPPP 156
Score = 31.5 bits (68), Expect = 1.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP GG PPPPP
Sbjct: 152 PPPPPIAPATGGPPPPPP 169
Score = 28.3 bits (60), Expect = 9.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP G PPPPP
Sbjct: 138 PPPPPPIAPATGGPPPPP 155
Score = 28.3 bits (60), Expect = 9.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP G PPPPP
Sbjct: 151 PPPPPPIAPATGGPPPPP 168
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPPXGXFXXXXKKK 457
PPPP G P PPP G KKK
Sbjct: 665 PPPPPPGGGVPGPPKPPPPGNLSTLNKKK 693
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPPXG 484
PPPP G PPPPP G
Sbjct: 358 PPPPGRAPQPLGGPPPPPPG 377
Score = 28.7 bits (61), Expect = 7.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPP 493
PPPP GG PPPP
Sbjct: 250 PPPPMRGPTSGGEPPPP 266
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPPXG 484
PPPP G PPPPP G
Sbjct: 270 PPPPGRAPQPLGGPPPPPPG 289
Score = 28.7 bits (61), Expect = 7.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPP 493
PPPP GG PPPP
Sbjct: 162 PPPPMRGPTSGGEPPPP 178
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 29.1 bits (62), Expect = 5.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP G PPPPP
Sbjct: 713 PPPPPPPPGCAGLPPPPP 730
Score = 29.1 bits (62), Expect = 5.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP G PPPPP
Sbjct: 727 PPPPSPQPGCAGLPPPPP 744
Score = 29.1 bits (62), Expect = 5.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP G PPPPP
Sbjct: 741 PPPPPPPPGCAGLPPPPP 758
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPPXG 484
PPPP GG PPPPP G
Sbjct: 206 PPPPPPIR--GGVPPPPPMG 223
>SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 29.1 bits (62), Expect = 5.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP G PPPPP
Sbjct: 757 PPPPPAVPGEGARPPPPP 774
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 28.7 bits (61), Expect = 7.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 540 PPPXXXXXXGGXPPPPP 490
PPP GG PPPPP
Sbjct: 363 PPPPPPPPVGGPPPPPP 379
Score = 28.3 bits (60), Expect = 9.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP G PPPPP
Sbjct: 363 PPPPPPPPVGGPPPPPPP 380
>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 28.3 bits (60), Expect = 9.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 543 PPPPXXXXXXGGXPPPPP 490
PPPP G PPPPP
Sbjct: 587 PPPPAHHVNKPGVPPPPP 604
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,488,854
Number of Sequences: 59808
Number of extensions: 134595
Number of successful extensions: 949
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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