Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A07
         (928 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    31   1.4  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    31   1.4  
At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family...    30   2.5  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   4.4  
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t...    29   4.4  
At1g61080.1 68414.m06877 proline-rich family protein                   29   4.4  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    29   4.4  
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro...    29   5.8  
At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    28   7.6  
At1g24150.1 68414.m03047 formin homology 2 domain-containing pro...    28   7.6  

>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 542 PPPPXXXXXGGGXXPPPPXG 483
           PPPP      GG  PPPP G
Sbjct: 388 PPPPAPPPGSGGPKPPPPPG 407


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 542 PPPPXXXXXGGGXXPPPPXG 483
           PPPP      GG  PPPP G
Sbjct: 388 PPPPAPPPGSGGPKPPPPPG 407


>At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family
           protein similar to SWISS-PROT:Q15428
          Length = 277

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 543 PPPPXXXXXXGGXPPPPPXGXF 478
           PPPP         PPPPP G F
Sbjct: 230 PPPPPPPPHQAQPPPPPPSGLF 251


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 543 PPPPXXXXXXGGXPPPPPXG 484
           PPPP      GG PPPPP G
Sbjct: 679 PPPPPPPP--GGGPPPPPGG 696


>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to auxin
           down regulated GB:X69640 GI:296442 from [Glycine max];
           contains Pfam profile PF00234: Protease inhibitor/seed
           storage/LTP family
          Length = 297

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 476 KXXPXGGGGGXPPXXXXXXGGGG 544
           K  P GG GG PP      GGGG
Sbjct: 64  KPPPHGGKGGGPPHHGGGGGGGG 86


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 543 PPPPXXXXXXGGXPPPPP 490
           PPPP      G  PPPPP
Sbjct: 592 PPPPPMPLANGATPPPPP 609



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -3

Query: 542 PPPPXXXXXGGGXXPPPPXGXFXXXXKKK 456
           PPPP      G   PPPP G       KK
Sbjct: 623 PPPPRMGMANGAAGPPPPPGAARSLRPKK 651


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 543 PPPPXXXXXXGGXPPPPP 490
           PPPP      G  PPPPP
Sbjct: 408 PPPPPPPGKKGAGPPPPP 425



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 543 PPPPXXXXXXGGXPPPPP 490
           PPPP       G PPPPP
Sbjct: 409 PPPPPPGKKGAGPPPPPP 426



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 543 PPPPXXXXXXGGXPPPPPXG 484
           PPPP         PPPPP G
Sbjct: 396 PPPPPPKKGPAAPPPPPPPG 415


>At5g07770.1 68418.m00889 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 722

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 540 PPPXXXXXXGGXPPPPP 490
           PPP      GG PPPPP
Sbjct: 698 PPPTLPSMSGGAPPPPP 714


>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
            cDNA putative transcription factor (HUA2) GI:4868119;
            contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 543  PPPPXXXXXXGGXPPPPPXGXF 478
            PPPP         PPPPP   F
Sbjct: 1079 PPPPSPPLPPSSLPPPPPAALF 1100


>At1g24150.1 68414.m03047 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 725

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 543 PPPPXXXXXXGGXPPPPP 490
           PPPP      G  PPPPP
Sbjct: 261 PPPPPKLKNNGPSPPPPP 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,511,453
Number of Sequences: 28952
Number of extensions: 147039
Number of successful extensions: 1181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2207676696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)