Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A05
         (864 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    31   1.6  
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)                30   2.1  
SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    29   3.7  
SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)                       29   6.5  

>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 177 EAWLRRKSHEELGMSGRAREQP*HVQDEHEP 269
           EAWL RK H E  +S   RE+   V+++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250


>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
          Length = 1281

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -1

Query: 474 RALAVVLPTVPGIEAVTFVNFLSAFRCLSNVVSQEVGALNV---AVFARTGAFAAPVPXV 304
           RAL V+   + G +A+T  NF+S   C       +   LN+   AV   TG  A PV  V
Sbjct: 285 RALMVLHSRITGEDALTLTNFISFKACCHAHSGDDEVILNLHFGAVTMETGILAIPVTPV 344

Query: 303 DL 298
            +
Sbjct: 345 PI 346


>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 184 GFEENLMRNWVCLVEHESSRDTSKTN 261
           GFEE + R W+   + E S D +KTN
Sbjct: 33  GFEEEVKRQWIGCDKLEGSNDITKTN 58


>SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)
          Length = 246

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +1

Query: 112 VVLCVGSEAKTFTRCGLVHELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYG 291
           VV   G  + + +   +   L++ GF  +L  + V  +   +S    K    RNG K   
Sbjct: 41  VVKVTGGRSNSSSHEDVAQSLKRSGFLYDLTESSV--IPTATSATYRKFRLKRNGMKKTE 98

Query: 292 LFQINXRYWCS 324
            F+   R WCS
Sbjct: 99  FFKYLRRKWCS 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,136,899
Number of Sequences: 59808
Number of extensions: 417813
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)