Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A05
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33985.1 68417.m04822 expressed protein                             30   1.7  
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    29   5.3  
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam...    28   9.2  
At1g63380.1 68414.m07166 short-chain dehydrogenase/reductase (SD...    28   9.2  
At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SD...    28   9.2  
At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SD...    28   9.2  

>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 147 HEMRSRA*AEEAWLRRKSHEELGMSGRAR 233
           H     A  EEAWLR+K  + LG  GR++
Sbjct: 19  HSWSPDADREEAWLRKKGKQSLGRLGRSK 47


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -2

Query: 224 TRHTQFLMRFSSKPCFLS---SCTRPHLVNVLASEPTQRTTKAKIINFCISIVSFE 66
           TR+   L + SSK    S   S    HLVNV   E + R ++  I   C S VSFE
Sbjct: 6   TRNMMTLSKRSSKTKTGSVWFSYLEEHLVNVHIFEESPRDSRDAICKLCKSTVSFE 61


>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 557

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 647 SPNFCXSDCAPDLNTQSACL 588
           S  FC  DC+PD+N    C+
Sbjct: 242 SLRFCRKDCSPDMNCDVCCV 261


>At1g63380.1 68414.m07166 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 287

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 199 LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINXRYWCSKG 330
           L+  +VCL+  ++ R  S  N +       GL +    Y CSKG
Sbjct: 143 LISKYVCLLMRDAERGGSVINVSSISGLHRGLLRGGLAYACSKG 186


>At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 276

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 199 LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINXRYWCSKG 330
           L+  +VCL+  ++ R  S  N +       GL +    Y CSKG
Sbjct: 134 LISKYVCLLMRDAKRGGSVINVSSISGLHRGLLRGGLAYACSKG 177


>At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 277

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 199 LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINXRYWCSKG 330
           L+  +VCL+  ++ R  S  N +       GL +    Y CSKG
Sbjct: 135 LISKYVCLLMRDAKRGGSVINVSSISGLHRGLLRGGLAYACSKG 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,420,857
Number of Sequences: 28952
Number of extensions: 284871
Number of successful extensions: 709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)