Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A04
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0204 - 19022329-19023990                                         30   2.8  
06_03_0613 + 22748223-22749513,22750046-22750179,22751066-227513...    29   3.6  
04_01_0249 - 3284107-3286377                                           29   6.4  

>05_04_0204 - 19022329-19023990
          Length = 553

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 273 IEKSCDKYMNVDVVKQFMEMYKMGMLPRGETF 368
           + K CD++  + VVK F +M K G+ P   TF
Sbjct: 355 MRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTF 386


>06_03_0613 +
           22748223-22749513,22750046-22750179,22751066-22751309,
           22751401-22751609,22751691-22751740,22751933-22752053,
           22752138-22752383
          Length = 764

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -1

Query: 418 TRKTLTASSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYSLAIS 251
           +R TL +  +W  L   K+    ++ +L ++ NCL  +   + S+++S L SL +S
Sbjct: 118 SRLTLASLGVWGELPGAKLHRLQALRVLNLTGNCLYGAVPEHFSRMYS-LQSLVLS 172


>04_01_0249 - 3284107-3286377
          Length = 756

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/86 (23%), Positives = 39/86 (45%)
 Frame = +3

Query: 99  PRRQPQRLVVATGRWSSPREPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 278
           PR      ++ +G+W   R  +V+      +L + ++LD+  +PT +    +   +YN+ 
Sbjct: 343 PRSWLHHALLCSGKWRLIRRLIVS------DLNLFRILDNNKKPTRYRMWSQTIGQYNLL 396

Query: 279 KSCDKYMNVDVVKQFMEMYKMGMLPR 356
             C +Y +    K     +K GM  R
Sbjct: 397 HECTRYESEARTKN----WKSGMFKR 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,583,191
Number of Sequences: 37544
Number of extensions: 419155
Number of successful extensions: 881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)