Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A04
         (868 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   8.6  
SB_51116| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)                28   8.6  
SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)                      28   8.6  

>SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
 Frame = +3

Query: 132 TGRWSSPREPMVNLDMKMK-ELCIMKLLDHILQPT----MFEDIKEIAKEYNIEKSCDKY 296
           TG++S       NL +++  E   + ++ H L+      + ++I  I K++   K  +K 
Sbjct: 32  TGKYSGSAHQECNLKLRINPEEIKVPVIFHNLRGYDSHYIMQEIGAIVKKHT-HKGEEKQ 90

Query: 297 MNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKV 410
           MN++ +   MEMY   ML    TF+ + +       K+
Sbjct: 91  MNINAIPNNMEMYMAFMLGNHLTFIDSFQFMSSSLEKL 128


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 456 TACWMRERINGGMFVYAFTXACFHR 530
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


>SB_51116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 28/106 (26%), Positives = 42/106 (39%)
 Frame = -3

Query: 602 DMAVNEEVGIDLVRSGQVETLAVGSVEARXSKSVDEHASVDPFSHPARSPHENIEVLSVV 423
           D++V+ ++G+D+     V       V      SVD   SVD       S   N+ V   V
Sbjct: 287 DVSVDVDIGVDVSVDVNVSVDVDVDVSVDVDVSVDVDVSVDVDVGVDVSVDVNVSVDVDV 346

Query: 422 EDSEDFDGFFHLELVGVDEGLSTRXXXXXXXXXXXLNDIDIHVLVA 285
           + S DFD    +  V VD G+                D+D+ V V+
Sbjct: 347 DVSVDFDADVDVS-VDVDVGVDVSVNVDVPVDVDVYVDVDVGVDVS 391


>SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)
          Length = 1087

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
 Frame = +3

Query: 234 MFEDIKEIAKEYNI--EKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVK 407
           + ++I  I K++     K  +K MN++ +   ME Y   ML    TF+ + ++ M  +++
Sbjct: 645 IMKEIGAIVKKHTDVNSKGEEKQMNINAIPNNMEKYMAFMLGNHLTFIDSFQV-MNFSLE 703

Query: 408 VFRVLYYAKDFDVFMRTACWMRERINGGMFVYAFTXACFHRTDCKGLYLPAPYEIYPYFF 587
              + Y +K F    R     R+    G++ Y +  + F R D K   LPA  + Y   +
Sbjct: 704 RLGLKYTSKSFK-GKRLDLMARK----GVYPYDYMDS-FERFDDK---LPAKEDFYSIMY 754

Query: 588 VDSHV 602
            D H+
Sbjct: 755 -DQHI 758


>SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)
          Length = 289

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -3

Query: 623 HHKGXTDDMAVN-EEVGIDLVRSGQVETLAVGSVEARXSKSVDEHASVDPFSHPARSPHE 447
           H KG  + MA   +E  I    +    T    S  ++ S++ D H S    SH +R P  
Sbjct: 63  HEKGDQNPMATELDEKAISSRTTSANRTRRPDSYRSKNSENTDSHRSRKSESHQSRKPDS 122

Query: 446 NIEVLS 429
           +   +S
Sbjct: 123 HRSCIS 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,877,530
Number of Sequences: 59808
Number of extensions: 446678
Number of successful extensions: 1042
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)