Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A04
         (868 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa...    30   2.3  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    30   2.3  
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    29   4.0  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    29   4.0  
At4g31877.1 68417.m04530 expressed protein                             28   9.3  

>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 717

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -3

Query: 623 HHKGXTDDMAVNEEVGIDLVRSGQVETLAVGSVEARXSKSVDEHASVDPFS-HPARSPHE 447
           +H   ++  AVN   G D +R  ++  +  G  ++    + DE  +  P S     + HE
Sbjct: 188 NHAPKSNYPAVNNNFGSDPIRRPEIREIKTG--KSLRVYNDDEPLAYSPVSLAQINTIHE 245

Query: 446 NIEVLSVVEDSEDFDGFF 393
           + E    VED +DF GFF
Sbjct: 246 SDEN-DDVEDDDDFPGFF 262


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 557  GQVETLAVGSVEARXSKSVDEHASVDPFSHPARSPHENIEV 435
            G+ ET++ G V+A    S   + S DP S P ++P E + +
Sbjct: 2332 GRRETMSSGEVKAEEIGSDGVNESTDPSSLPGQTPQERVRL 2372


>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 360 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 485
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 360 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 485
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At4g31877.1 68417.m04530 expressed protein
          Length = 102

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = -1

Query: 397 SSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFM----YLSQLFSML 269
           +S+  SL++   S   S+P+ + S NC+  S F+    ++SQ + ML
Sbjct: 6   ASLACSLLYLSDSGSDSVPVTFSSSNCVPISHFLSHVFFISQRYEML 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,786,133
Number of Sequences: 28952
Number of extensions: 320405
Number of successful extensions: 689
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)