Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A02
         (853 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.3  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    23   2.3  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   4.1  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
 Frame = -3

Query: 389 TPAKSGRAQSANSMTTPSSTPIIGAISRRWRK------TGC*GPKTAPD 261
           TP     A + N +T P+S P++   S +  K      T C  P   PD
Sbjct: 93  TPIVPHFAYNHNPLTPPNSEPLVSPKSEKEEKDMETTLTPCASPNRKPD 141


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 242 HFFIKLRLEQFLDLNNLSSSTFLILRL*WVYLKVLSWSW 358
           HF+  +    F  LN   S  F+I+   WV + +  WS+
Sbjct: 111 HFYYPVATMSFYVLNFFGSIQFIIISKHWVTI-MKEWSF 148


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 573 ATPPQYQMXQYVPKYAPPXSQXKISLAMT 659
           ATPPQ    QY    + P    K++ + T
Sbjct: 33  ATPPQSPNQQYTKDCSSPTPSDKLNTSTT 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,869
Number of Sequences: 336
Number of extensions: 3768
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)