Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A02
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    29   0.84 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.9  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 410 KKLQDVAAAFLXGAMPRKEGMERKDLLAANVRXFKXKARLWTK 538
           K  +D  A  +     +K G  R DLL AN+  FK   R  TK
Sbjct: 83  KDCKDATAVVITAGKNQKPGETRMDLLKANISIFKEILREVTK 125


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 24/79 (30%), Positives = 25/79 (31%)
 Frame = -2

Query: 813 GHXGXHSGXXGXGGXGXPPGXITXXKHSLXGXXPIXSRXSWGXGPCFGSRXGSWPGKFXF 634
           GH G   G  G G  G PPG          G          G G   G   G   G   F
Sbjct: 184 GHNGGGFGGFGGGSGGPPPG---PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGF 240

Query: 633 GNXGGHILEHIGAFGIGVG 577
           G   G     +G FG G G
Sbjct: 241 GGGPGGFGGGLGGFGGGPG 259


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 416 ASSGFAVGRTPAKSGRAQSANSMTTPSSTPI 324
           ++SG     T   SG    + S+TTP+STP+
Sbjct: 579 SASGSTGEFTNTNSGNGDVSGSVTTPTSTPL 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,826
Number of Sequences: 5004
Number of extensions: 57034
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)