Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A02
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)               66   3e-11
SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)           61   1e-09
SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.39 
SB_44638| Best HMM Match : TFIIB (HMM E-Value=0.0079)                  31   0.90 
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)                   31   1.2  

>SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)
          Length = 462

 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 33/78 (42%), Positives = 46/78 (58%)
 Frame = +1

Query: 184 KMAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELAD 363
           K   P+RV V+ A+G +AY +L  +  G VFG Q+ V ++LLD       L+GV  E+ D
Sbjct: 127 KKINPLRVCVSKASGPLAYGMLASLVQGEVFGFQEEVSIYLLDTPENQEALQGVAYEIED 186

Query: 364 CALPLLAGVLPTANPEEA 417
           CA PL  GV  T++P  A
Sbjct: 187 CAWPLFRGVHITSDPAVA 204


>SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)
          Length = 411

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 30/54 (55%), Positives = 37/54 (68%)
 Frame = +1

Query: 256 IASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCALPLLAGVLPTANPEEA 417
           I SG     + P+ LHLLDI PMMG L GVV+EL DCA+PLL  V+ T + E+A
Sbjct: 102 IPSGVNVHIELPIILHLLDITPMMGALGGVVLELQDCAIPLLHEVVATDDAEKA 155



 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 34/79 (43%), Positives = 44/79 (55%)
 Frame = +2

Query: 410 KKLQDVAAAFLXGAMPRKEGMERKDLLAANVRXFKXKARLWTKRLVXM*RSLVVGHPTPI 589
           K   D+  A L GAMPR+EGMERKDLL+AN + F+ + +   K      + LVVG+P   
Sbjct: 154 KAFTDIDVAILVGAMPRREGMERKDLLSANAKIFEAQGKALDKVAKKTCKILVVGNPAN- 212

Query: 590 PNAPICSKICPPXFPKXNF 646
            N  I  +   P  PK NF
Sbjct: 213 TNCLIAQR-WAPSIPKENF 230


>SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 381 QKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRLLRS 277
           + W  T G +H+  FKY H RR ++ +E++ L R+
Sbjct: 332 RSWLPTWGAIHEELFKYHHKRRFLRDLEDELLPRT 366


>SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 375 WQSTVGQLHDNTFKYTHHRRNIKKVEEDRL 286
           W  T G +H+  FKY H RR ++ +E++ L
Sbjct: 235 WLPTWGAIHEELFKYHHKRRFLRDLEDELL 264


>SB_44638| Best HMM Match : TFIIB (HMM E-Value=0.0079)
          Length = 472

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 381 QKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRL 286
           + W  T   +HD+ F++ H RR IK +E++ L
Sbjct: 152 RSWLPTWSAVHDDLFRHHHKRRFIKSLEDELL 183


>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
          Length = 961

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -2

Query: 393 KNPSQKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRL--LRSKNCSRRNLIK 247
           +N  +KW+S++ Q  D   +Y   RRN  +  E++L  LR ++    N++K
Sbjct: 227 ENNRKKWESSMQQRRDKEVEYMEARRNRVEDYENQLQTLRIQDAEEYNMVK 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,610,164
Number of Sequences: 59808
Number of extensions: 473825
Number of successful extensions: 1116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)