Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_A02
(853 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical ... 88 9e-18
AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical ... 88 9e-18
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 36 0.037
Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical pr... 35 0.084
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 34 0.15
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 0.79
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 0.79
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 0.79
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 0.79
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 0.79
Z66524-7|CAA91419.2| 626|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.2
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 4.2
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 4.2
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 29 5.5
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 29 5.5
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 29 5.5
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 28 7.3
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 28 7.3
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 28 7.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 9.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 9.7
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 28 9.7
AF014940-1|AAB63933.1| 143|Caenorhabditis elegans Hypothetical ... 28 9.7
>AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical
protein F46E10.10b protein.
Length = 273
Score = 87.8 bits (208), Expect = 9e-18
Identities = 42/77 (54%), Positives = 54/77 (70%)
Frame = +1
Query: 187 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADC 366
M+ P+RV+VTGAAGQI YS++ +IA G VFG +QPV L LLD+ +LEGVV EL DC
Sbjct: 1 MSAPLRVLVTGAAGQIGYSIVIRIADGTVFGKEQPVELVLLDVPQCSNILEGVVFELQDC 60
Query: 367 ALPLLAGVLPTANPEEA 417
ALP L V+ + + A
Sbjct: 61 ALPTLFSVVAVTDEKSA 77
Score = 62.1 bits (144), Expect = 5e-10
Identities = 34/71 (47%), Positives = 43/71 (60%)
Frame = +2
Query: 434 AFLXGAMPRKEGMERKDLLAANVRXFKXKARLWTKRLVXM*RSLVVGHPTPIPNAPICSK 613
AFL GAMPR+EGMERKDLLAANV+ FK + + + + +VVG+P NA I +K
Sbjct: 84 AFLVGAMPRREGMERKDLLAANVKIFKSQGKALAEYAKPTTKVIVVGNPAN-TNAFIAAK 142
Query: 614 ICPPXFPKXNF 646
P NF
Sbjct: 143 YAAGKIPAKNF 153
>AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical
protein F46E10.10a protein.
Length = 336
Score = 87.8 bits (208), Expect = 9e-18
Identities = 42/77 (54%), Positives = 54/77 (70%)
Frame = +1
Query: 187 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADC 366
M+ P+RV+VTGAAGQI YS++ +IA G VFG +QPV L LLD+ +LEGVV EL DC
Sbjct: 1 MSAPLRVLVTGAAGQIGYSIVIRIADGTVFGKEQPVELVLLDVPQCSNILEGVVFELQDC 60
Query: 367 ALPLLAGVLPTANPEEA 417
ALP L V+ + + A
Sbjct: 61 ALPTLFSVVAVTDEKSA 77
Score = 62.1 bits (144), Expect = 5e-10
Identities = 34/71 (47%), Positives = 43/71 (60%)
Frame = +2
Query: 434 AFLXGAMPRKEGMERKDLLAANVRXFKXKARLWTKRLVXM*RSLVVGHPTPIPNAPICSK 613
AFL GAMPR+EGMERKDLLAANV+ FK + + + + +VVG+P NA I +K
Sbjct: 84 AFLVGAMPRREGMERKDLLAANVKIFKSQGKALAEYAKPTTKVIVVGNPAN-TNAFIAAK 142
Query: 614 ICPPXFPKXNF 646
P NF
Sbjct: 143 YAAGKIPAKNF 153
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 35.9 bits (79), Expect = 0.037
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Frame = +3
Query: 195 TYKSCCNWC----CRTNCIL-TSLSN-------CVWSSFWTSTTCLPPPS*YCAYDGCT* 338
TYK C ++C CI T+L++ C SS STTC P + YC YDG T
Sbjct: 453 TYKECQDYCRDARSEPQCIQGTALTDSNGNFIICGGSSA-ASTTC--PANHYCYYDGTTY 509
Query: 339 RCCHGVGRLCSATFGWGSS 395
CC CS ++ G+S
Sbjct: 510 GCCPTQAYTCSLSYKSGAS 528
>Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical
protein F41E7.5 protein.
Length = 112
Score = 34.7 bits (76), Expect = 0.084
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = -2
Query: 819 GXGHXGXHSGXXGXGGXGXPPGX-ITXXKHSLXGXXPIXSRXSWGXGPCFGSRXGSWPGK 643
G G G G G GG G PG + G +G GP +G R G + G
Sbjct: 33 GGGGFGGGPGQFGRGGFGGGPGSNYGPGRGGFGGNGGFGGNGGFGGGPSYGGR-GGFGGG 91
Query: 642 FXFGNXGG 619
FG GG
Sbjct: 92 PGFGGRGG 99
Score = 31.5 bits (68), Expect = 0.79
Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Frame = -2
Query: 843 WGGPPNQXGXGHXGXHSG---XXGXGGXGXPPGXITXXKHSLXGXXPIXSRXSWGXGPCF 673
+GG P Q G G G G G GG G G G R +G GP F
Sbjct: 37 FGGGPGQFGRGGFGGGPGSNYGPGRGGFGGNGGF--GGNGGFGGGPSYGGRGGFGGGPGF 94
Query: 672 GSRXG 658
G R G
Sbjct: 95 GGRGG 99
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 33.9 bits (74), Expect = 0.15
Identities = 22/70 (31%), Positives = 24/70 (34%)
Frame = +2
Query: 584 PIPNAPICSKICPPXFPKXNFPGHDPXLDPKQGPXPQLXRLKIGXXPXKECLXXVIXPGG 763
PI P S PP PK P P P P PQ + P L + P
Sbjct: 454 PISTGPSYSSTTPPTTPKPAPP--PPSRIPNPSPSPQPAEVSKSPPPPPP-LPPIATPSS 510
Query: 764 XPXPPXPXXP 793
P PP P P
Sbjct: 511 VPPPPPPPPP 520
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 843 WGGPPNQXGXGHXGXHSGXXGXGGXGXP 760
WGGP Q G G G G G GG G P
Sbjct: 271 WGGPQQQQGGGGWG-QQGGGGQGGWGGP 297
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 843 WGGPPNQXGXGHXGXHSGXXGXGGXGXP 760
WGGP Q G G G G G GG G P
Sbjct: 234 WGGPQQQQGGGGWG-QQGGGGQGGWGGP 260
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 843 WGGPPNQXGXGHXGXHSGXXGXGGXGXP 760
WGGP Q G G G G G GG G P
Sbjct: 233 WGGPQQQQGGGGWG-QQGGGGQGGWGGP 259
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 843 WGGPPNQXGXGHXGXHSGXXGXGGXGXP 760
WGGP Q G G G G G GG G P
Sbjct: 272 WGGPQQQQGGGGWG-QQGGGGQGGWGGP 298
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 843 WGGPPNQXGXGHXGXHSGXXGXGGXGXP 760
WGGP Q G G G G G GG G P
Sbjct: 271 WGGPQQQQGGGGWG-QQGGGGQGGWGGP 297
>Z66524-7|CAA91419.2| 626|Caenorhabditis elegans Hypothetical
protein T13H5.3 protein.
Length = 626
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 370 LPLLAGVLPTANPEEASRCCCCFPXWC 450
+P L G PT NP++A+ CC +C
Sbjct: 506 VPPLEGEAPTCNPDDANAHCCSNGGYC 532
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/72 (29%), Positives = 21/72 (29%)
Frame = -2
Query: 834 PPNQXGXGHXGXHSGXXGXGGXGXPPGXITXXKHSLXGXXPIXSRXSWGXGPCFGSRXGS 655
PP G G G G G GG PP G G G C G G
Sbjct: 51 PPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGC 110
Query: 654 WPGKFXFGNXGG 619
G G GG
Sbjct: 111 GGGGGGCGGGGG 122
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/72 (29%), Positives = 21/72 (29%)
Frame = -2
Query: 834 PPNQXGXGHXGXHSGXXGXGGXGXPPGXITXXKHSLXGXXPIXSRXSWGXGPCFGSRXGS 655
PP G G G G G GG PP G G G C G G
Sbjct: 51 PPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGC 110
Query: 654 WPGKFXFGNXGG 619
G G GG
Sbjct: 111 GGGGGGCGGGGG 122
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Frame = -2
Query: 840 GGPPNQXGXG---HXGXHSGXXGXGGXGXPP 757
GGPP G G G G G GG G PP
Sbjct: 172 GGPPGHGGMGGPPGHGGQGGPPGHGGMGGPP 202
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -2
Query: 840 GGPPNQXGXGHXGXHSGXXGXGGXGXP--PGXITXXKH 733
GGPP G G G G G GG G P PG + H
Sbjct: 190 GGPPGHGGMG--GPPPGQGGPGGPGGPGGPGGMLPKSH 225
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = -2
Query: 837 GPPNQXGX--GHXGXHSGXXGXGGXGXPPG 754
GPP G GH G G G GG G PPG
Sbjct: 166 GPPGGMGGPPGHGGM-GGPPGHGGQGGPPG 194
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Frame = -2
Query: 840 GGPPNQXGXG---HXGXHSGXXGXGGXGXPP 757
GGPP G G G G G GG G PP
Sbjct: 452 GGPPGHGGMGGPPGHGGQGGPPGHGGMGGPP 482
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -2
Query: 840 GGPPNQXGXGHXGXHSGXXGXGGXGXP--PGXITXXKH 733
GGPP G G G G G GG G P PG + H
Sbjct: 470 GGPPGHGGMG--GPPPGQGGPGGPGGPGGPGGMLPKSH 505
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = -2
Query: 837 GPPNQXGX--GHXGXHSGXXGXGGXGXPPG 754
GPP G GH G G G GG G PPG
Sbjct: 446 GPPGGMGGPPGHGGM-GGPPGHGGQGGPPG 474
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 28.7 bits (61), Expect = 5.5
Identities = 24/85 (28%), Positives = 26/85 (30%)
Frame = -2
Query: 837 GPPNQXGXGHXGXHSGXXGXGGXGXPPGXITXXKHSLXGXXPIXSRXSWGXGPCFGSRXG 658
GPP G G G G G PG + S+ P G G G
Sbjct: 228 GPPGPPGPGGPPGQDGHPGDAGAPGAPGQVVAGPGSVGPPGPQGPPGLAGPDGQPGHGGG 287
Query: 657 SWPGKFXFGNXGGHILEHIGAFGIG 583
PG GH E GA G G
Sbjct: 288 GQPGPQGPPGDDGHPGEDGGAGGPG 312
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = -2
Query: 837 GPPNQXGXGHXGXHSGXXGXGGXGXPPGXITXXKHSLXG 721
GPP G G G G G PG I H + G
Sbjct: 95 GPPGPPGEGGQSGEPGHDGDDGKPGAPGVIVAITHDIPG 133
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = -2
Query: 837 GPPNQXGXGHXGXHSGXXGXGGXGXPPGXITXXKHSLXG 721
GPP G G G G G PG I H + G
Sbjct: 95 GPPGPPGEGGQSGEPGHDGDDGKPGAPGVIVAITHDIPG 133
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -2
Query: 837 GPPNQXGXGHXGXHSGXXGXGGXGXPPGXITXXKHSLXG 721
GPP G G + G G G PG I H + G
Sbjct: 101 GPPGPPGEGGQKGNPGHDGDDGKPGAPGVIVAITHDIPG 139
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -2
Query: 837 GPPNQXGXGHXGXHSGXXGXGGXGXPPGXITXXKHSLXG 721
GPP G G + G G G PG I H + G
Sbjct: 95 GPPGPPGEGGQKGNPGHDGDDGKPGAPGVIVAITHDIPG 133
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 840 GGPPNQXGXGHXGXHSGXXGXGGXGXPPG 754
GGP N G G G G GG G P G
Sbjct: 101 GGPGNPGGPGGLGTPGGPGTPGGPGNPGG 129
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 840 GGPPNQXGXGHXGXHSGXXGXGGXGXPPG 754
GGP N G G G G GG G P G
Sbjct: 122 GGPGNPGGLGGPGNPGGPGTPGGPGTPGG 150
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 9.7
Identities = 26/80 (32%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Frame = +2
Query: 581 TPIPNAPICSKICPPXFPKXNFPGHDPXLD--PKQGPXPQLXRLK---IGXXPXKECLXX 745
TP P P S + PP P PG P P P P R +G P
Sbjct: 284 TPRPPPPPSSGMWPPPPPPP--PGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP-PG 340
Query: 746 VIXPGGXPXPPXPXXPEXLP 805
+ PGG P PP P P P
Sbjct: 341 MRYPGGMPPPPPPRYPSAGP 360
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 9.7
Identities = 26/80 (32%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Frame = +2
Query: 581 TPIPNAPICSKICPPXFPKXNFPGHDPXLD--PKQGPXPQLXRLK---IGXXPXKECLXX 745
TP P P S + PP P PG P P P P R +G P
Sbjct: 294 TPRPPPPPSSGMWPPPPPPP--PGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP-PG 350
Query: 746 VIXPGGXPXPPXPXXPEXLP 805
+ PGG P PP P P P
Sbjct: 351 MRYPGGMPPPPPPRYPSAGP 370
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -2
Query: 837 GPPNQXGXGHXGXHSGXXGXGGXGXPPGXITXXKHS 730
GPP G HSG G G PPG HS
Sbjct: 211 GPPGPAGGPGQPGHSGGAGSPGPQGPPGPSGQPGHS 246
>AF014940-1|AAB63933.1| 143|Caenorhabditis elegans Hypothetical
protein W02D7.3 protein.
Length = 143
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 410 SGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAISRRWRKTGC 285
+ +A +P S ++S S + S+TP A+SRR GC
Sbjct: 71 TNYAKRHSPPPSYSSRSKQSSVSSSATPTKSAVSRRNYLAGC 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,594,091
Number of Sequences: 27780
Number of extensions: 370411
Number of successful extensions: 1483
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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