Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A01
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.62 
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)                   29   3.3  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               29   4.4  
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   28   7.7  

>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 393 FGGXPXXXPPPPXXKXGGGG 452
           FGG P   PPPP    GGGG
Sbjct: 195 FGGPPSAPPPPPAPPVGGGG 214


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 30/97 (30%), Positives = 31/97 (31%), Gaps = 6/97 (6%)
 Frame = +3

Query: 222 WGNPPKXXXXXG---PXKXGGGGXPXEKKXPPPGFXSXEKNFPP---RGGF*KFXXGGXX 383
           WG PP      G   P   G GG P     PPPG        PP   +GG       G  
Sbjct: 523 WGQPPPGAGQGGGPPPPGAGQGGGP-----PPPGAGQGWGQPPPGAGQGGGPPPPGAGQG 577

Query: 384 KKKFGGXPXXXPPPPXXKXGGGGXPXXXXXXXXGXXP 494
                G     PPPP     GGG P        G  P
Sbjct: 578 GPPPPGAGQEGPPPPGA-GQGGGPPPPGAGQGWGLPP 613



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 26/83 (31%), Positives = 27/83 (32%)
 Frame = +3

Query: 210 GPLXWGNPPKXXXXXGPXKXGGGGXPXEKKXPPPGFXSXEKNFPPRGGF*KFXXGGXXKK 389
           G   WG PP           G GG P     PPPG        PP  G       G  + 
Sbjct: 486 GGQGWGQPPPGA--------GQGGGP-----PPPGAGQGGGPPPPGAG------QGWGQP 526

Query: 390 KFGGXPXXXPPPPXXKXGGGGXP 458
             G      PPPP    GGG  P
Sbjct: 527 PPGAGQGGGPPPPGAGQGGGPPP 549


>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
          Length = 135

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +3

Query: 306 PPGFXSXEKNFPPRGGF*KFXXGGXXKKKFGGXPXXXPPPPXXKXGGGGXP 458
           P G+      +PP GG+     GG    + G      PPPP    G GG P
Sbjct: 34  PGGYPPAPGGYPPSGGYGYPPAGGYPPPQPG--YAGGPPPPGIAPGIGGPP 82


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 396 GGXPXXXPPPPXXKXGGGGXP 458
           GG P   PPPP    G GG P
Sbjct: 311 GGAPPPPPPPPPPPPGDGGAP 331


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -1

Query: 451 PPPPXXXXGGGGXXXGXPPNFFLXXPPXXNF*NPPR 344
           PPPP      GG     PP F    PP  N   PPR
Sbjct: 198 PPPPPPPGFPGGAPPPPPPPFGAPPPPALNG-GPPR 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,415,423
Number of Sequences: 59808
Number of extensions: 240664
Number of successful extensions: 396
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)