Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_A01
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.73
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.73
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.73
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 30 2.2
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 28 6.8
Z75547-17|CAN99726.1| 432|Caenorhabditis elegans Hypothetical p... 24 7.7
Z74474-5|CAN99697.1| 432|Caenorhabditis elegans Hypothetical pr... 24 7.7
Z49130-7|CAA88972.2| 316|Caenorhabditis elegans Hypothetical pr... 28 8.9
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.73
Identities = 22/75 (29%), Positives = 25/75 (33%)
Frame = +3
Query: 213 PLXWGNPPKXXXXXGPXKXGGGGXPXEKKXPPPGFXSXEKNFPPRGGF*KFXXGGXXKKK 392
P G+PP P GG P + PP + PP G GG
Sbjct: 266 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP-PPPPRGSPPTGSLPPPQAGGSPPPA 324
Query: 393 FGGXPXXXPPPPXXK 437
G P PPPP K
Sbjct: 325 GTGSP---PPPPRQK 336
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 0.73
Identities = 22/75 (29%), Positives = 25/75 (33%)
Frame = +3
Query: 213 PLXWGNPPKXXXXXGPXKXGGGGXPXEKKXPPPGFXSXEKNFPPRGGF*KFXXGGXXKKK 392
P G+PP P GG P + PP + PP G GG
Sbjct: 287 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP-PPPPRGSPPTGSLPPPQAGGSPPPA 345
Query: 393 FGGXPXXXPPPPXXK 437
G P PPPP K
Sbjct: 346 GTGSP---PPPPRQK 357
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.73
Identities = 22/75 (29%), Positives = 25/75 (33%)
Frame = +3
Query: 213 PLXWGNPPKXXXXXGPXKXGGGGXPXEKKXPPPGFXSXEKNFPPRGGF*KFXXGGXXKKK 392
P G+PP P GG P + PP + PP G GG
Sbjct: 272 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP-PPPPRGSPPTGSLPPPQAGGSPPPA 330
Query: 393 FGGXPXXXPPPPXXK 437
G P PPPP K
Sbjct: 331 GTGSP---PPPPRQK 342
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/69 (28%), Positives = 21/69 (30%)
Frame = +3
Query: 222 WGNPPKXXXXXGPXKXGGGGXPXEKKXPPPGFXSXEKNFPPRGGF*KFXXGGXXKKKFGG 401
W PP GP G P PPP + PP F G F G
Sbjct: 75 WRGPPGPSGPSGPPVYHNQGPPRGYPPPPPQGADTWRGAPPPAHHGHF---GPPGHHFQG 131
Query: 402 XPXXXPPPP 428
P PP P
Sbjct: 132 PPQHFPPGP 140
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 360 FRTPPGGGNFFRGXKNPGGGXFFXXG 283
FR GGG FRG + GGG F G
Sbjct: 3 FRGGRGGGGGFRGGRGGGGGGGFRGG 28
>Z75547-17|CAN99726.1| 432|Caenorhabditis elegans Hypothetical
protein K10C8.3c protein.
Length = 432
Score = 24.2 bits (50), Expect(2) = 7.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 457 GXPPPPXXXXGGGGXXXG 404
G PPPP GG G G
Sbjct: 216 GPPPPPSNPYGGSGNDNG 233
Score = 22.2 bits (45), Expect(2) = 7.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 424 GGGXXXGXPPNFFLXXPPXXNF*NPPRGGKFF 329
GGG P + F+ PP + PP+GG +
Sbjct: 263 GGGVQ---PVSNFIPPPPNRHPNEPPQGGNIY 291
>Z74474-5|CAN99697.1| 432|Caenorhabditis elegans Hypothetical
protein K10C8.3c protein.
Length = 432
Score = 24.2 bits (50), Expect(2) = 7.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 457 GXPPPPXXXXGGGGXXXG 404
G PPPP GG G G
Sbjct: 216 GPPPPPSNPYGGSGNDNG 233
Score = 22.2 bits (45), Expect(2) = 7.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 424 GGGXXXGXPPNFFLXXPPXXNF*NPPRGGKFF 329
GGG P + F+ PP + PP+GG +
Sbjct: 263 GGGVQ---PVSNFIPPPPNRHPNEPPQGGNIY 291
>Z49130-7|CAA88972.2| 316|Caenorhabditis elegans Hypothetical
protein T06D8.9 protein.
Length = 316
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 255 GPXKXGGGGXPXEKKXPPPGFXSXEKNFPPRGGF 356
GP GGGG P PP + K PP GF
Sbjct: 191 GPGSGGGGGGPGGYPSAPPPYDDYSK--PPPYGF 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,701,439
Number of Sequences: 27780
Number of extensions: 243229
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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