Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_A01
         (802 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15830.1 68414.m01900 expressed protein                             39   0.004
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...    29   2.7  
At4g19200.1 68417.m02833 proline-rich family protein contains pr...    29   3.6  
At5g47430.1 68418.m05844 expressed protein                             29   4.7  
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...    28   6.3  
At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family...    28   6.3  

>At1g15830.1 68414.m01900 expressed protein
          Length = 483

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 29/89 (32%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
 Frame = +3

Query: 213 PLXWGNPPKXXXXXGPXKXGGGGXPXEKKXPPP-----GFXSXEKNFPPR--GGF*KFXX 371
           P+  G          P K GGGG P     PPP     G        PP+  GG      
Sbjct: 125 PIRGGGGEPAIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVIP 184

Query: 372 GGXXKKKFGGXPXXXPPPPXXKXGGGGXP 458
           G    K+ GG     P  P  K GGGG P
Sbjct: 185 GAPPPKRGGGGEPVIPGAPPPKRGGGGEP 213



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 27/74 (36%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
 Frame = +3

Query: 258 PXKXGGGGXPXEKKXPPP-----GFXSXEKNFPPR--GGF*KFXXGGXXKKKFGGXPXXX 416
           P K GGGG P     PPP     G        PP+  GG      G    K+ GG     
Sbjct: 156 PPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVI 215

Query: 417 PPPPXXKXGGGGXP 458
           P  P  K GGGG P
Sbjct: 216 PGAPPPKRGGGGEP 229



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 23/67 (34%), Positives = 24/67 (35%)
 Frame = +3

Query: 258 PXKXGGGGXPXEKKXPPPGFXSXEKNFPPRGGF*KFXXGGXXKKKFGGXPXXXPPPPXXK 437
           P   GGGG P     PPP            GG      G    K+ GG     P  P  K
Sbjct: 124 PPIRGGGGEPAIPGAPPP---------KRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPK 174

Query: 438 XGGGGXP 458
            GGGG P
Sbjct: 175 RGGGGEP 181



 Score = 31.9 bits (69), Expect = 0.51
 Identities = 22/63 (34%), Positives = 23/63 (36%)
 Frame = +3

Query: 270 GGGGXPXEKKXPPPGFXSXEKNFPPRGGF*KFXXGGXXKKKFGGXPXXXPPPPXXKXGGG 449
           GGGG P     PPP           RGG      G     + GG     P  P  K GGG
Sbjct: 97  GGGGEPVIPGAPPPN----------RGGGETVIPGAPPPIRGGGGEPAIPGAPPPKRGGG 146

Query: 450 GXP 458
           G P
Sbjct: 147 GEP 149


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
 Frame = +3

Query: 264 KXGG---GGXPXEKKXPPPGFXSXEKNFPPRGGF*KFXXGGXXKKKFGGXPXXXPPPPXX 434
           K GG   GG P +++  PP        F  R G+     GG  K   GG P    P    
Sbjct: 96  KPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPRGGDEK---GGAPADFQP---S 149

Query: 435 KXGGGGXP 458
             GGGG P
Sbjct: 150 FQGGGGRP 157


>At4g19200.1 68417.m02833 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 179

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 270 GGGGXPXEKKXPPPGFXSXEKNFPPRGGF*KFXXGGXXKKKFGGXPXXXPPPP 428
           GGG  P  +   PP     ++ +PP GG   +   G     +   P   PP P
Sbjct: 21  GGGHYPPAQGGYPPQGYPPQQGYPPAGG---YPPAGYPPGAYPAAPGGYPPAP 70


>At5g47430.1 68418.m05844 expressed protein 
          Length = 879

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 258 PXKXGGGGXPXEKKXPPPGFXSXEKNFP 341
           P +  G G   E+K PPPG+     N P
Sbjct: 189 PGRMNGRGFGMERKTPPPGYVCHRCNIP 216


>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
            Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
            sapiens]
          Length = 1703

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = -1

Query: 451  PPPPXXXXGGGGXXXGXPPNF--FLXXPPXXNF*NPPRGG 338
            P PP    GGGG   G PP        PP   +  PP GG
Sbjct: 1664 PAPPMPGMGGGG-GYGPPPQMGGMPGMPPMPPYGMPPMGG 1702


>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 147

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/56 (32%), Positives = 19/56 (33%)
 Frame = +3

Query: 258 PXKXGGGGXPXEKKXPPPGFXSXEKNFPPRGGF*KFXXGGXXKKKFGGXPXXXPPP 425
           P    GGG       PPP      K  PP GG      GG     + G     PPP
Sbjct: 55  PPSSSGGGGSYYYSPPPPSSSGGVKYPPPYGG---DGYGGYYPPPYYGNYGTPPPP 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,224,102
Number of Sequences: 28952
Number of extensions: 239608
Number of successful extensions: 417
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)