Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P24
         (1395 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    27   0.44 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    27   0.44 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   7.2  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
            transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 1327 PHQXPPPXXQPRHPXSPPXHT 1389
            PHQ PP   QP     PP +T
Sbjct: 204  PHQQPPIQQQPNQGQQPPGNT 224


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
            protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 1327 PHQXPPPXXQPRHPXSPPXHT 1389
            PHQ PP   QP     PP +T
Sbjct: 206  PHQQPPIQQQPNQGQQPPGNT 226


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 1227 APPPPPP 1247
            APPPPPP
Sbjct: 730  APPPPPP 736


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,261
Number of Sequences: 336
Number of extensions: 1211
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 41618205
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)