Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P24
         (1395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    33   0.071
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   6.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    22   8.7  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 33.5 bits (73), Expect = 0.071
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +2

Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHN-PATPXXPPXT 1387
            PPPPPP     +   + P         V+P   PT  P +    PA P  PP T
Sbjct: 192  PPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPT 245



 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = +2

Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPPXTP 1390
            P PPPP P     + +  S+       V         PP    PATP  PP  P
Sbjct: 236  PAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPP---PPATPSQPPRPP 286


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXR 1300
            PPPPPP P   +   +PP  T  R
Sbjct: 5    PPPPPPAPAPAAAAPAPPLMTGDR 28


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
 Frame = -1

Query: 1392 RGVXGGXXGVAGLXXRG-GXLVGXXXGATXXXRXXVREGGEXRXEXFXGXGGGGGGR 1225
            RG  GG  G  G    G G   G   GA    R   R G   R     G GG  GGR
Sbjct: 8    RGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGR 64


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
 Frame = +2

Query: 1226 RPPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPR--XHNPATPXXPPXTP 1390
            R  P  P     S   +PP  T       AP   P   PP      PA P  PP  P
Sbjct: 398  RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454



 Score = 27.1 bits (57), Expect = 6.2
 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
 Frame = +2

Query: 1226 RPPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATP----XXPPXTPR 1393
            RPPPPPP P   + R  PP         + P   P +       P  P      PP  PR
Sbjct: 310  RPPPPPP-PSRRN-RGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367



 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/51 (29%), Positives = 18/51 (35%)
 Frame = +2

Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPP 1381
            PPPPPP     + R  PP  +            P   PP     + P  PP
Sbjct: 361  PPPPPPRSAPSTGRQPPPLSSS------RAVSNPPAPPPAIPGRSAPALPP 405


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 1227 APPPPPPXXXXXLXAXLPPXAPXXAP 1304
            +PPPPPP       A  P   P  AP
Sbjct: 731  SPPPPPPAVIVPTPAPAPIPVPPPAP 756


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 22.2 bits (45), Expect(2) = 8.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 1141 LXPXHPPPPP 1170
            L P +PPPPP
Sbjct: 4    LPPGNPPPPP 13



 Score = 22.2 bits (45), Expect(2) = 8.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 1147 PXHPPPPPXXXPLXXP 1194
            P  PPPPP   P   P
Sbjct: 9    PPPPPPPPGFEPPSQP 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,424
Number of Sequences: 5004
Number of extensions: 13062
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 773012242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)