Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_P24
(1395 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 39 0.007
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 37 0.030
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 35 0.16
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 34 0.28
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 34 0.28
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.36
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.36
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 33 0.36
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 33 0.64
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 33 0.64
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 32 0.84
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 32 0.84
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 32 0.84
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 32 0.84
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 31 1.5
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 23 1.7
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 31 2.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 2.6
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 2.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 2.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 3.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 3.4
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 30 3.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 3.4
Z83222-1|CAB05712.1| 410|Caenorhabditis elegans Hypothetical pr... 30 4.5
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 4.5
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 29 5.9
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 29 7.8
Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical pr... 29 7.8
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 7.8
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 7.8
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 29 7.8
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 29 7.8
U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical pr... 25 8.5
U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical pr... 25 8.6
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 39.1 bits (87), Expect = 0.007
Identities = 37/124 (29%), Positives = 38/124 (30%), Gaps = 1/124 (0%)
Frame = -1
Query: 1389 GVXGGXXGVAGLXXRGGXLVGXXXGATXXXRXXVREGGEXRXEXFXGXGGGG-GGRXXXX 1213
G GG G G GG G G GG F G GGGG GG
Sbjct: 118 GYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGG 177
Query: 1212 XRXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGGGSAGG*GXRXXXMVFXXGFXXGVG 1033
G + G GG G G GGG GG G G G G
Sbjct: 178 GGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGGYGGG-GDGGYGPSGGYGGGYGPG 236
Query: 1032 GGXG 1021
GG G
Sbjct: 237 GGYG 240
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 37.1 bits (82), Expect = 0.030
Identities = 20/53 (37%), Positives = 22/53 (41%)
Frame = +2
Query: 1232 PPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPPXTP 1390
PPPPP P R PP R + P P + PPR P PP TP
Sbjct: 138 PPPPPPPRVP--RTPPPRSPPPRRPPMTPPS-PQRRPPRTPPSPEPRNPPRTP 187
Score = 36.7 bits (81), Expect = 0.039
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPPXTP 1390
PPPPPP + SPP R P P P P+ PP TP
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTP 175
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSR------TXXRXXXVAPXXXPTKXPPRXHNPATPXXPP 1381
PPPPP P R PP R + R P + PPR P +P PP
Sbjct: 140 PPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPR--TPPSPIPPP 194
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical protein
Y48E1B.1 protein.
Length = 497
Score = 34.7 bits (76), Expect = 0.16
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPPXTP 1390
PPPPPP S + P+ T + P P PP P P PP TP
Sbjct: 324 PPPPPPMKLDPSPQ---PAATPVEITEIPPIISPPAPPP-PPPPPPPPPPPQTP 373
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical protein
T28C6.1 protein.
Length = 281
Score = 33.9 bits (74), Expect = 0.28
Identities = 24/89 (26%), Positives = 31/89 (34%)
Frame = -1
Query: 1287 REGGEXRXEXFXGXGGGGGGRXXXXXRXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXG 1108
++GG GG GG + R G Q G+GG G + G G
Sbjct: 174 QDGGSQGGWGGQNGGGQGGNQGGGGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQG 233
Query: 1107 GGSAGG*GXRXXXMVFXXGFXXGVGGGXG 1021
G GG G + + G G GG G
Sbjct: 234 GQQGGGRGGQQGPGGWGGGGRGGGWGGWG 262
Score = 29.9 bits (64), Expect = 4.5
Identities = 23/77 (29%), Positives = 26/77 (33%)
Frame = -1
Query: 1251 GXGGGGGGRXXXXXRXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGGGSAGG*GXRXX 1072
G GG GG+ R G W GG G + G GG+ GG G R
Sbjct: 147 GWGGSQGGQNGGGGRGGSGGQGGWGGSQDGGSQGGWGGQ----NGGGQGGNQGGGGGRGG 202
Query: 1071 XMVFXXGFXXGVGGGXG 1021
G G GG G
Sbjct: 203 NQGGEQGGWGGQGGSQG 219
Score = 29.5 bits (63), Expect = 5.9
Identities = 32/127 (25%), Positives = 36/127 (28%), Gaps = 3/127 (2%)
Frame = -1
Query: 1392 RGVXGGXXGVAGLXXRGGXLVGXXXGATXXXRXXVREGGEXRXEXFXGXGGGGGGRXXXX 1213
R G G G G G G+ GG + G GG
Sbjct: 125 RSDSGSGQGGWGGQQGGNSNAGGWGGSQGGQNGGGGRGGSGGQGGWGGSQDGGSQGGWGG 184
Query: 1212 XRXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXG---GGSAGG*GXRXXXMVFXXGFXX 1042
G Q GRGG G + G G GGS GG G + G
Sbjct: 185 QNGGGQGGNQGGGGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQGGQQGGGRGGQQ 244
Query: 1041 GVGGGXG 1021
G GG G
Sbjct: 245 GPGGWGG 251
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical protein
C34D4.11 protein.
Length = 136
Score = 33.9 bits (74), Expect = 0.28
Identities = 31/102 (30%), Positives = 31/102 (30%)
Frame = -1
Query: 1395 PRGVXGGXXGVAGLXXRGGXLVGXXXGATXXXRXXVREGGEXRXEXFXGXGGGGGGRXXX 1216
P GG G G GG G G R GG GG GGG
Sbjct: 32 PSPFFGGRSGGWGRPGWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGG 91
Query: 1215 XXRXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGGGSAGG 1090
R G G GGR G R G GGG GG
Sbjct: 92 GGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGG--GGGRGGG 131
Score = 32.7 bits (71), Expect = 0.64
Identities = 26/77 (33%), Positives = 26/77 (33%)
Frame = -1
Query: 1251 GXGGGGGGRXXXXXRXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGGGSAGG*GXRXX 1072
G G GGGR G W G GG G R G GGG GG G
Sbjct: 60 GGSGWGGGRGGGWGNN--GGGGNWGGNGGGGNGGGG-----RGGGGGGGGGRGGGGGGRG 112
Query: 1071 XMVFXXGFXXGVGGGXG 1021
G G GGG G
Sbjct: 113 GGGGGGGGRGGGGGGRG 129
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 33.5 bits (73), Expect = 0.36
Identities = 31/102 (30%), Positives = 32/102 (31%)
Frame = -1
Query: 1389 GVXGGXXGVAGLXXRGGXLVGXXXGATXXXRXXVREGGEXRXEXFXGXGGGGGGRXXXXX 1210
G GG G G GG G G GG G GGGGGG
Sbjct: 84 GGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGS 143
Query: 1209 RXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGGGSAGG*G 1084
G G GG G G GGGS+GG G
Sbjct: 144 SGGCGGGSSGGCGGGGGGGCG-----GGGGGGCGGGSSGGGG 180
Score = 30.3 bits (65), Expect = 3.4
Identities = 33/123 (26%), Positives = 35/123 (28%)
Frame = -1
Query: 1389 GVXGGXXGVAGLXXRGGXLVGXXXGATXXXRXXVREGGEXRXEXFXGXGGGGGGRXXXXX 1210
G GG G G GG G G GG G G GGG
Sbjct: 122 GGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGY 181
Query: 1209 RXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGGGSAGG*GXRXXXMVFXXGFXXGVGG 1030
G G G G G GGGS+GG G G+ GG
Sbjct: 182 AVAPSGGGGCGGGGSSGG-GGYAVAPSGGGGCGGGGSSGGGGYASAPSG-GGGYATSGGG 239
Query: 1029 GXG 1021
G G
Sbjct: 240 GSG 242
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 33.5 bits (73), Expect = 0.36
Identities = 31/102 (30%), Positives = 32/102 (31%)
Frame = -1
Query: 1389 GVXGGXXGVAGLXXRGGXLVGXXXGATXXXRXXVREGGEXRXEXFXGXGGGGGGRXXXXX 1210
G GG G G GG G G GG G GGGGGG
Sbjct: 84 GGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGS 143
Query: 1209 RXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGGGSAGG*G 1084
G G GG G G GGGS+GG G
Sbjct: 144 SGGCGGGSSGGCGGGGGGGCG-----GGGGGGCGGGSSGGGG 180
Score = 30.3 bits (65), Expect = 3.4
Identities = 33/123 (26%), Positives = 35/123 (28%)
Frame = -1
Query: 1389 GVXGGXXGVAGLXXRGGXLVGXXXGATXXXRXXVREGGEXRXEXFXGXGGGGGGRXXXXX 1210
G GG G G GG G G GG G G GGG
Sbjct: 122 GGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGY 181
Query: 1209 RXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGGGSAGG*GXRXXXMVFXXGFXXGVGG 1030
G G G G G GGGS+GG G G+ GG
Sbjct: 182 AVAPSGGGGCGGGGSSGG-GGYAVAPSGGGGCGGGGSSGGGGYASAPSG-GGGYATSGGG 239
Query: 1029 GXG 1021
G G
Sbjct: 240 GSG 242
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 33.5 bits (73), Expect = 0.36
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAP--XXXPTKXPPRXHNPATPXXPPXTP 1390
PPPPPP P PP AP P PP +P+ PP P
Sbjct: 1340 PPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPPPPPP 1395
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 32.7 bits (71), Expect = 0.64
Identities = 32/124 (25%), Positives = 36/124 (29%)
Frame = -1
Query: 1281 GGEXRXEXFXGXGGGGGGRXXXXXRXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGGG 1102
GG R G GGGGG G + G GG+ G GGG
Sbjct: 170 GGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGG 229
Query: 1101 SAGG*GXRXXXMVFXXGFXXGVGGGXG*XSPPARXXXXXXXYRXXXPHXCXXGFXGXXXG 922
GG G G+ GGG G P + G G G
Sbjct: 230 GQGGWGG-PQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQG 288
Query: 921 GXGG 910
G GG
Sbjct: 289 GWGG 292
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 32.7 bits (71), Expect = 0.64
Identities = 32/124 (25%), Positives = 36/124 (29%)
Frame = -1
Query: 1281 GGEXRXEXFXGXGGGGGGRXXXXXRXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGGG 1102
GG R G GGGGG G + G GG+ G GGG
Sbjct: 208 GGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGG 267
Query: 1101 SAGG*GXRXXXMVFXXGFXXGVGGGXG*XSPPARXXXXXXXYRXXXPHXCXXGFXGXXXG 922
GG G G+ GGG G P + G G G
Sbjct: 268 GQGGWGG-PQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQG 326
Query: 921 GXGG 910
G GG
Sbjct: 327 GWGG 330
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 32.3 bits (70), Expect = 0.84
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = +2
Query: 1232 PPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPPXTP 1390
PPP P P +PP + AP + PP P P PP P
Sbjct: 97 PPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYP 149
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 32.3 bits (70), Expect = 0.84
Identities = 33/124 (26%), Positives = 37/124 (29%)
Frame = -1
Query: 1281 GGEXRXEXFXGXGGGGGGRXXXXXRXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGGG 1102
GG R G GGGGG G + G GG+ G G GGG
Sbjct: 208 GGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQ-GGYGGDYGGGWGQQGGG 266
Query: 1101 SAGG*GXRXXXMVFXXGFXXGVGGGXG*XSPPARXXXXXXXYRXXXPHXCXXGFXGXXXG 922
GG G G+ GGG G P + G G G
Sbjct: 267 GQGGWGG-PQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQG 325
Query: 921 GXGG 910
G GG
Sbjct: 326 GWGG 329
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 32.3 bits (70), Expect = 0.84
Identities = 33/124 (26%), Positives = 37/124 (29%)
Frame = -1
Query: 1281 GGEXRXEXFXGXGGGGGGRXXXXXRXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGGG 1102
GG R G GGGGG G + G GG+ G G GGG
Sbjct: 170 GGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQ-GGYGGDYGGGWGQQGGG 228
Query: 1101 SAGG*GXRXXXMVFXXGFXXGVGGGXG*XSPPARXXXXXXXYRXXXPHXCXXGFXGXXXG 922
GG G G+ GGG G P + G G G
Sbjct: 229 GQGGWGG-PQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQG 287
Query: 921 GXGG 910
G GG
Sbjct: 288 GWGG 291
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 32.3 bits (70), Expect = 0.84
Identities = 33/124 (26%), Positives = 37/124 (29%)
Frame = -1
Query: 1281 GGEXRXEXFXGXGGGGGGRXXXXXRXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGGG 1102
GG R G GGGGG G + G GG+ G G GGG
Sbjct: 208 GGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQ-GGYGGDYGGGWGQQGGG 266
Query: 1101 SAGG*GXRXXXMVFXXGFXXGVGGGXG*XSPPARXXXXXXXYRXXXPHXCXXGFXGXXXG 922
GG G G+ GGG G P + G G G
Sbjct: 267 GQGGWGG-PQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQG 325
Query: 921 GXGG 910
G GG
Sbjct: 326 GWGG 329
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein 33
protein.
Length = 304
Score = 31.5 bits (68), Expect = 1.5
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPPXTP 1390
PPP P P + PP AP PP P P PP +P
Sbjct: 147 PPPCKPCPDGPAGPPGPPGAPGDAGTNGAPGAPGGDAPPGEAGPKGPPGPPGSP 200
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 22.6 bits (46), Expect(3) = 1.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 1257 FXGXGGGGGG 1228
F G GGGGGG
Sbjct: 51 FGGGGGGGGG 60
Score = 22.6 bits (46), Expect(3) = 1.7
Identities = 13/49 (26%), Positives = 16/49 (32%)
Frame = -1
Query: 1251 GXGGGGGGRXXXXXRXVXXGXXQWXXXGRGGRVXGXEXRXXRAXGXXGG 1105
G GGGGGG G + G G + + A GG
Sbjct: 56 GGGGGGGGGGFGGGNGGFGGGSNYDQGGNGNSGDQQKRKRDMAKDLIGG 104
Score = 22.6 bits (46), Expect(3) = 1.7
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -1
Query: 1110 GGGSAGG*GXRXXXMVFXXGFXXGVGGGXG 1021
GGG+ GG G G +GGG G
Sbjct: 130 GGGNQGGGGGGGFNFNDIGGLINSMGGGGG 159
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical protein
C18D11.4 protein.
Length = 309
Score = 30.7 bits (66), Expect = 2.6
Identities = 26/85 (30%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Frame = -1
Query: 1278 GEXRXEXFXGXGGGGGGRXXXXXRXVXXGXXQWXXXGRGGRVXGXEXRXXRAXG-XXGGG 1102
G+ R G G GGG G ++ RGG G R G GG
Sbjct: 167 GDRRGGGSSGGGRFGGGGGDRFNDRGSRGGDRYGGDRRGGGGGGGGDRYGGGGGDRYGGD 226
Query: 1101 SAGG*GXRXXXMVFXXGFXXGVGGG 1027
GG G R GF G GGG
Sbjct: 227 RYGGGGGRRGSPDRRGGFRSGGGGG 251
Score = 30.7 bits (66), Expect = 2.6
Identities = 34/119 (28%), Positives = 39/119 (32%), Gaps = 4/119 (3%)
Frame = -1
Query: 1344 GGXLVGXXXGATXXXRXXVR--EGGEXRXEXFXGXGGGGGGRXXXXXRXVXXGXXQWXXX 1171
GG G G R R GG+ G GGGGGG G ++
Sbjct: 172 GGSSGGGRFGGGGGDRFNDRGSRGGDRYGGDRRGGGGGGGGDRYGGGGGDRYGGDRY--G 229
Query: 1170 GRGGRVXGXEXRXXRAXGXXGGG--SAGG*GXRXXXMVFXXGFXXGVGGGXG*XSPPAR 1000
G GGR + R G GGG +GG G G GGG P R
Sbjct: 230 GGGGRRGSPDRRGGFRSGGGGGGYMRSGGGGGGPDRRDHRDNDRNGGGGGHRPYDPSFR 288
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 2.6
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +2
Query: 1226 RPPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPPXTP 1390
RPPPPP PP RT P P P R P PP P
Sbjct: 286 RPPPPPSSGMWPPPPPPPPGRTPGPPG--MPGMPPPPPPSRFGPPGMGGMPPPPP 338
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTK--XPPRXHNPATPXXPP 1381
PPPPP PP R + P P++ PP H P PP
Sbjct: 335 PPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.7 bits (66), Expect = 2.6
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPPXTP 1390
PPPPPP PP + P P PP P P PP P
Sbjct: 31 PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPP--PMCPPPPPPMP 82
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 2.6
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +2
Query: 1226 RPPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPPXTP 1390
RPPPPP PP RT P P P R P PP P
Sbjct: 296 RPPPPPSSGMWPPPPPPPPGRTPGPPG--MPGMPPPPPPSRFGPPGMGGMPPPPP 348
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTK--XPPRXHNPATPXXPP 1381
PPPPP PP R + P P++ PP H P PP
Sbjct: 345 PPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPP 1381
PPPPPP PP ++ P PP P P PP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNP 1360
PPPPPP PP V P P K P+ P
Sbjct: 772 PPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVPKVDGP 815
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPP 1381
PPPPPP PP ++ P PP P P PP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNP 1360
PPPPPP PP V P P K P+ P
Sbjct: 772 PPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVPKVDGP 815
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like (grd
related) protein29 protein.
Length = 172
Score = 30.3 bits (65), Expect = 3.4
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -1
Query: 1125 AXGXXGGGSAGG*GXRXXXMVFXXGFXXGVGGGXG*XSPP 1006
A G GGG GG G + G G GGG G PP
Sbjct: 28 AGGCGGGGGCGGGGGCGGGCGYGGGGGCGYGGGYGCGIPP 67
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPP 1381
PPPPPP PP ++ P PP P P PP
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNP 1360
PPPPPP PP V P P K P+ P
Sbjct: 355 PPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVPKVDGP 398
>Z83222-1|CAB05712.1| 410|Caenorhabditis elegans Hypothetical protein
E01B7.1 protein.
Length = 410
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPPXTP 1390
P PP P PP R + P P+ PP P P PP P
Sbjct: 341 PAAPPAAPALNRQSTIPPVAMTQRP--MIPPSLPSSTPPAPLKPVAPPTPPIFP 392
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.9 bits (64), Expect = 4.5
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Frame = -1
Query: 1245 GGGGGGRXXXXXRXVXXGXXQWXXXGRGGRVX--GXEXRXXRAXGXXGGGSAGG*GXRXX 1072
GGGGGG G + G GGR G A G GGG GG G
Sbjct: 320 GGGGGGDFP-----AGGGGGGYSTGGGGGRADSGGAAGGAGGAGGYSGGGGGGGGGAAAG 374
Query: 1071 XMVFXXGFXXGVGGGXG*XSPPA 1003
G+ G GGG + PA
Sbjct: 375 G-----GYNAGGGGGGAPQAAPA 392
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 29.5 bits (63), Expect = 5.9
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = -1
Query: 1170 GRGGRVXGXEXRXXRAXGXXGGGSAGG*GXRXXXMVFXXGFXXGVGGGXG 1021
G G R G + R G GGG+ GG G G GGG G
Sbjct: 577 GNGQRFGGRDHRYQGGSGNGGGGNGGGGGFGGGGQRSGGGGGFQSGGGGG 626
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical protein
Y49E10.10 protein.
Length = 425
Score = 29.1 bits (62), Expect = 7.8
Identities = 14/47 (29%), Positives = 16/47 (34%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATP 1369
PPP P + + PP T VAP P NP P
Sbjct: 192 PPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNPPAP 238
>Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical protein
F42G4.3a protein.
Length = 603
Score = 29.1 bits (62), Expect = 7.8
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNP 1360
PPPPPP P PSR P PP+ P
Sbjct: 3 PPPPPPPPPLLPSGEILPSRKWKTEDAPRRNNHPAPAPPKPSRP 46
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.1 bits (62), Expect = 7.8
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 1230 PPPPPPXXXXXLXAXLPPXAPXXAP 1304
PPPPPP + A PP P P
Sbjct: 633 PPPPPPMGLPAVGAGAPPPPPPPPP 657
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.1 bits (62), Expect = 7.8
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 1230 PPPPPPXXXXXLXAXLPPXAPXXAP 1304
PPPPPP + A PP P P
Sbjct: 459 PPPPPPMGLPAVGAGAPPPPPPPPP 483
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 29.1 bits (62), Expect = 7.8
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = -1
Query: 1170 GRGGRVXGXEXRXXRAXGXXGGGSAGG*GXRXXXMVFXXGFXXGVGGGXG 1021
G GG + G G GGG GG G F G GGG G
Sbjct: 37 GAGGDILGGLASNFFGGGGGGGGGGGGGGFGGGNGGFGGGGGGNYGGGGG 86
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 29.1 bits (62), Expect = 7.8
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +2
Query: 1229 PPPP--PPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATPXXPP 1381
PP P PP P S PPS T AP P++ P +P P P
Sbjct: 283 PPQPAVPPKPAKISVADPPPS-TIAPAAPSAPAPAPSQLNPTSTSPTMPAIAP 334
>U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical protein
W03B1.9 protein.
Length = 633
Score = 25.4 bits (53), Expect(2) = 8.5
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATP 1369
PPPPPP P S P A + P PA P
Sbjct: 446 PPPPPPPPRRRSRSRDRPRLVFSNIGGSARRRTRSAPPAIQDVPAVP 492
Score = 21.8 bits (44), Expect(2) = 8.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 1226 RPPPPPPXP 1252
R PPPPP P
Sbjct: 443 RVPPPPPPP 451
>U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical protein
W03B1.5 protein.
Length = 581
Score = 25.4 bits (53), Expect(2) = 8.6
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +2
Query: 1229 PPPPPPXPXXXSXRXSPPSRTXXRXXXVAPXXXPTKXPPRXHNPATP 1369
PPPPPP P S P A + P PA P
Sbjct: 394 PPPPPPPPRRRSRSRDRPRLVFSNIGGSARRRTRSAPPAIQDVPAVP 440
Score = 21.8 bits (44), Expect(2) = 8.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 1226 RPPPPPPXP 1252
R PPPPP P
Sbjct: 391 RVPPPPPPP 399
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,865,389
Number of Sequences: 27780
Number of extensions: 159123
Number of successful extensions: 3637
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2148
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3954537640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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