Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_P21
(914 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.11
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 33 0.24
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.43
SB_55808| Best HMM Match : Pentaxin (HMM E-Value=1.2e-08) 31 1.7
SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 29 4.0
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 34.7 bits (76), Expect = 0.11
Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 11/121 (9%)
Frame = +2
Query: 137 CSENEIYVXCVXAHCGPRTCSEXXLPMPCPLVRXX----YCXAGCL--CKXGX-LKXXSG 295
C E C+ ++C P S+ L + PL YC + C CK +K
Sbjct: 1453 CCTGECPAGCLPSNCKPDCPSKCCLTILEPLQEGPNATAYCPSDCFESCKPNCPIKCCPA 1512
Query: 296 XCVARENCPNSDLCSENEIYVKCVXAXCX----PMTCSKKXGPKICPLVEXXSCKAGCVC 463
+ CP CSE+ +C C P T + +CP+ SCK C
Sbjct: 1513 TAI---KCPVG--CSEHSCKPECPSKCCMKVLPPTTLGQNTANSLCPVYCLTSCKPDCPI 1567
Query: 464 K 466
K
Sbjct: 1568 K 1568
Score = 30.3 bits (65), Expect = 2.3
Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
Frame = +2
Query: 185 PRTCSEXXLPMPCPLVRXXYCXAGCLCKXGXLKXXSGXCVARENCPNSDLCSENEIYVKC 364
P TCS CPL+ C C + C ++ + C E+ K
Sbjct: 1670 PATCSPDSCRPECPLICCSVCPPNCSAQSCGNFCPPKCCTSQLSKDRQKECKES--CPKV 1727
Query: 365 VXAXCXPMTCSKKXGPKICPL-VEXXSCKAGCV 460
C CS ICP +CK GC+
Sbjct: 1728 CGPGCPVQCCSDL---NICPANCTGSACKPGCI 1757
Score = 29.9 bits (64), Expect = 3.0
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Frame = +2
Query: 185 PRTCSEXXLPMPCPLVRXXYCXAGCL---CKXGXLKXXSGXCVARENCPNSDLCSENEIY 355
P+ C P+ C C A C CK G + V+ N LC E
Sbjct: 1725 PKVCGPGC-PVQC-CSDLNICPANCTGSACKPGCITIEDSVTVS---LGNDKLCPE-ACL 1778
Query: 356 VKCVXAXCXPMTCSKKXGPKICPLVEXXSCKAGC 457
KC+ + C C K P +CP +C C
Sbjct: 1779 TKCLPS-CPSTCCIKNSPPVVCPKSCETTCTPDC 1811
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 33.5 bits (73), Expect = 0.24
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Frame = +2
Query: 230 VRXXY-CXAGCLCKXGXLKXXSGXCVARENCPNSDLCSEN-----EIYVKCVXAXCXPMT 391
VR Y C AG C L +G C R CP ++ + I C A P+
Sbjct: 816 VRDCYNCTAGYYCDAEGLTRVAGPCAERYYCPGANTRPDPPEFNCTIGHFCPGANAQPIP 875
Query: 392 CSKKXGPKICPLVEXXSCKAGCVCK 466
C K+ E C AG C+
Sbjct: 876 CQNNSFTKVTHAKECSLCPAGYYCE 900
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 32.7 bits (71), Expect = 0.43
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 642 CQAGCVCKEGYLKXDXGTCVPRENC 716
C +GC C +G + D GTCV C
Sbjct: 1248 CVSGCYCPDGLIMHDNGTCVQSMQC 1272
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = +2
Query: 245 CXAGCLCKXGXLKXXSGXCVARENCPNSDLCSENEIYVKCVXAXCXPMTCSKK 403
C +GC C G + +G CV C C N Y P CS+K
Sbjct: 1248 CVSGCYCPDGLIMHDNGTCVQSMQCQ----CKHNNKYYDA--GAISPTDCSRK 1294
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +3
Query: 642 CQAGCVC-KEGYLKXDXGTCVPRENCP 719
C GC C KEG L + CV + CP
Sbjct: 1156 CVEGCYCEKEGELMNNEHKCVDKTQCP 1182
>SB_55808| Best HMM Match : Pentaxin (HMM E-Value=1.2e-08)
Length = 574
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 717 GSFLGGHMYRYRLSDXPLYTRIRL 646
G+ LGGH+Y Y D P TRI L
Sbjct: 86 GNVLGGHLYFYHTGDHPDQTRIAL 109
>SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/65 (24%), Positives = 22/65 (33%)
Frame = +3
Query: 639 SCQAGCVCKEGYLKXDXGTCVPRENCPNSDXXSENEIYVXCVXXHCGPXTCXXXXXPMPX 818
+C C+C E G C P + C + +E + V C TC P
Sbjct: 289 NCSERCLCTEEGRLACIGLCPPPQTCSPQERKTERMVLVPGSECQCREITC-ISRVTTPQ 347
Query: 819 PLVXP 833
P P
Sbjct: 348 PTTVP 352
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 29.5 bits (63), Expect = 4.0
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Frame = +3
Query: 450 PDACVKXXI*KTIAVNVSPEKTXQILTSGSENEIYVNCVQAQCXPMTCSKKXGPXIXPLV 629
PD+ + T N Q +T EN ++ C A C P TC G
Sbjct: 153 PDSQHWSKVTSTYTYNTGQSALVQDVTC-PENAVFKYCTSA-C-PETCHDPPGRN---KT 206
Query: 630 XXXSCQAGCVCKEGYLKXDXGT----CVPRENCP 719
C GC CKE +++ C+ R+ CP
Sbjct: 207 CSMRCVEGCECKEEFVQRVNAVGKVQCIKRKECP 240
>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3474
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 654 CVCKEGYLKXDXGTCVPRENCPNSDXXSENE 746
C C EGY G CV C S+ SE++
Sbjct: 295 CTCFEGYHLTSDGQCVDINECSCSNQTSEDD 325
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,909,007
Number of Sequences: 59808
Number of extensions: 341582
Number of successful extensions: 603
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -