Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P21
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    37   2e-04
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    37   2e-04

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 642 CQAGCVCKEGYLKXDXGTCVPRENC 716
           C  GCVC+ GYL+     CVPR  C
Sbjct: 67  CAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 35.5 bits (78), Expect = 7e-04
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = +2

Query: 137 CSENEIYVXCVXAHCGPRTCSEXXLPMPCPLVRXXYCXAGCLCKXGXLKXXSGXCVAREN 316
           C  NEI+  C    C  R C      +P PL     C  GC+C+ G L+     CV R  
Sbjct: 37  CPSNEIFSRC-DGRC-QRFCPNV---VPKPLC-IKICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 317 C 319
           C
Sbjct: 91  C 91



 Score = 35.5 bits (78), Expect = 7e-04
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +2

Query: 335 CSENEIYVKCVXAXCXPMTCSKKXGPKICPLVEXXSCKAGCVCKXGYLKDDSGKCVXR 508
           C  NEI+ +C    C    C       +C  +    C  GCVC+ GYL++    CV R
Sbjct: 37  CPSNEIFSRC-DGRCQRF-CPNVVPKPLCIKI----CAPGCVCRLGYLRNKKKVCVPR 88


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 642 CQAGCVCKEGYLKXDXGTCVPRENC 716
           C  GCVC+ GYL+     CVPR  C
Sbjct: 67  CAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 35.5 bits (78), Expect = 7e-04
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = +2

Query: 137 CSENEIYVXCVXAHCGPRTCSEXXLPMPCPLVRXXYCXAGCLCKXGXLKXXSGXCVAREN 316
           C  NEI+  C    C  R C      +P PL     C  GC+C+ G L+     CV R  
Sbjct: 37  CPSNEIFSRC-DGRC-QRFCPNV---VPKPLC-IKICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 317 C 319
           C
Sbjct: 91  C 91



 Score = 35.5 bits (78), Expect = 7e-04
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +2

Query: 335 CSENEIYVKCVXAXCXPMTCSKKXGPKICPLVEXXSCKAGCVCKXGYLKDDSGKCVXR 508
           C  NEI+ +C    C    C       +C  +    C  GCVC+ GYL++    CV R
Sbjct: 37  CPSNEIFSRC-DGRCQRF-CPNVVPKPLCIKI----CAPGCVCRLGYLRNKKKVCVPR 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,048
Number of Sequences: 438
Number of extensions: 2843
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)