Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P20
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    30   0.53 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   3.7  
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    27   4.9  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    27   4.9  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    27   4.9  

>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 445 TIFVTSSIIWFIIGPIMRNFCQWNSFNGTE 356
           T+F  SS+IW +IGP  R F   N++ G +
Sbjct: 617 TVFFNSSVIWGVIGP-KRMFSGKNTYTGLQ 645


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +3

Query: 381  WQKFLMIGPIMNQIMLEVTKIVS*CILMETSPMLIALIRSSTFAIRKRLQLLL 539
            W KF     ++N + + ++  V+  I ++  P LIA I +S+ ++RK +  LL
Sbjct: 1712 WFKFGNNSNVINTLNVGIST-VNIDIWLDVIPQLIARIHASSLSVRKSVHQLL 1763


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 22/100 (22%), Positives = 42/100 (42%)
 Frame = +2

Query: 494 TFQYVCYKKKTSTVAMSSCGSVDSEYTLSKQTGNCYKFHKVPRTWSRAYMTCLAEGGYLT 673
           T++ V       TV M +   +  E  +++     +K  KVP  W R  +  + + G  T
Sbjct: 35  TYEGVKNANGNYTVTMIAGDGIGPE--IAQSVERIFKAAKVPIEWERVKVYPILKNGTTT 92

Query: 674 IINSQQEATFLKXLFAKXPCLSYGXEXSGKISLSLAXTTG 793
           I +  +E+     +  K P  +   +    ++L+L  T G
Sbjct: 93  IPDDAKESVRKNKVALKGPLATPIGKGHVSMNLTLRRTFG 132


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 407 DYEPDNAGGDENCILMYPDGNFADVNCTD 493
           +Y PD+     N +L YPDG + + N  D
Sbjct: 247 NYSPDDVAPPPNWVLRYPDG-YTESNMPD 274


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 392 PHDWADYEPDNAGGDENCILMYPDGNFADVN 484
           PH W DYE ++    +NC L   +   ADV+
Sbjct: 174 PHCWVDYESNDIESVQNCWLGDENLLLADVD 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,408
Number of Sequences: 5004
Number of extensions: 50354
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)