Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_P19
(996 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.047
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.33
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 2.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.4
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 9.5
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.5 bits (73), Expect = 0.047
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 908 PPXXPPXXXPPPXXXPPPXXPPP 976
PP PP PPP PP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
Score = 31.9 bits (69), Expect = 0.14
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 905 PPPXXPPXXXPPPXXXPPPXXPPP 976
PPP PP PP PPP PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPP--PPP 30
Score = 29.5 bits (63), Expect = 0.77
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 922 PPXXXPPXXXPPPXXPPXPXXPPP 993
PP PP PP PP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.33
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 905 PPPXXPPXXXPPPXXXPPPXXPPPXXXXXP 994
PP P PPP PPP PP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 30.7 bits (66), Expect = 0.33
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 907 PXXXPPPXXXPPXXXPPPXXPPXPXXPPP 993
P PPP PP PP P PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 29.9 bits (64), Expect = 0.58
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 905 PPPXXPPXXXPPPXXXPPPXXPPPXXXXXP 994
P P PP PPP PP PP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 907 PXXXPPPXXXPPXXXPPPXXPPXPXXPPP 993
P PP P PPP P P PP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 905 PPPXXPPXXXPPPXXXPPPXXP 970
PPP PP PP PPP P
Sbjct: 1716 PPPSAPPMPAGPPSA-PPPPLP 1736
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 907 PXXXPPPXXXPPXXXPPPXXPPXPXXPPP 993
P PP P P PP P PPP
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +2
Query: 905 PPPXXPPXXXPPPXXXPPPXXPPP 976
PP P P PPP PPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPP 196
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 907 PXXXPPPXXXPPXXXPPPXXPPXPXXPPP 993
P P P PP PP P PPP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPP 152
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Frame = +2
Query: 905 PPPXXPPXXXPPPXXXPP-PXXPPPXXXXXP 994
P P P PP PP P PPP P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAP 158
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Frame = +1
Query: 907 PXXXPPP---XXXPPXXXPPP----XXPPXPXXPPP 993
P PPP PP PPP PP P PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Frame = +2
Query: 905 PPPXXPPXXXPPPXXX---PPPXXPPP 976
P P P PPP PPP PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +2
Query: 905 PPPXXPPXXXPPPXXXPPPXXPPPXXXXXP 994
PPP P P P P P PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGP 761
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 905 PPPXXPPXXXPPPXXXPPPXXPP 973
PPP PP PPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 908 PPXXPPXXXPPPXXXPPPXXPPP 976
PP PP PPP PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 992 GGGXXGXGGXXGGGXXXGGXXXGGGXXXG 906
GG G GG G G G GGG G
Sbjct: 447 GGSRGGRGGFGGRGGFGGRGGFGGGRGRG 475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,093,468
Number of Sequences: 5004
Number of extensions: 11652
Number of successful extensions: 229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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