Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P18
         (889 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.79 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.79 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   1.0  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 432 FGQDCNGDGVVNCYDYMAIHKKGGYGCXGELPFNYVNVFNQCIXVFAQ 575
           FGQD N DGV+N    + +          +  F  +NVF+  + VF Q
Sbjct: 434 FGQDLNQDGVMNINGVLFVFLT---NMTFQNVFAVINVFSGELPVFLQ 478


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 432 FGQDCNGDGVVNCYDYMAIHKKGGYGCXGELPFNYVNVFNQCIXVFAQ 575
           FGQD N DGV+N    + +          +  F  +NVF+  + VF Q
Sbjct: 434 FGQDLNQDGVMNINGVLFVFLT---NMTFQNVFAVINVFSGELPVFLQ 478


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 322 ASAQ*PHVMRKRPHV--SPSHCRPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPAT 161
           +SA  P V    PH+  SP++ +P LH        P   S T  +S  S+  +PA+
Sbjct: 169 SSASSPSVTAA-PHLRDSPNYIKPQLHVSTGSTSSPTIASATYTNSANSSIWSPAS 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,861
Number of Sequences: 336
Number of extensions: 3959
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)