Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P18
         (889 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55053| Best HMM Match : MORN_2 (HMM E-Value=2.6e-06)                31   1.6  
SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_56756| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12)                   28   8.8  

>SB_55053| Best HMM Match : MORN_2 (HMM E-Value=2.6e-06)
          Length = 417

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
 Frame = +3

Query: 267 CEGETCGLFRITWGYWADAGKPTI-NG----LSPDAPDAYSSCTVDPYCAAQTVQNY--- 422
           C G+T  L+  TW  + + G   + NG    L   A   Y    VD  C  QT+  Y   
Sbjct: 227 CNGQTISLYGTTWSVYQEGGVDKVCNGQTISLYGTAWSVYQEGGVDKVCNGQTISLYGTA 286

Query: 423 ---MRRFGQD--CNGDGVVNCYDYMAIHKKGGYG--CXGE 521
               +  G D  CNG  +        ++++GG    C G+
Sbjct: 287 WTVYQEGGVDKVCNGQTISLYGTAWTVYQEGGVDKVCNGQ 326



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
 Frame = +3

Query: 267 CEGETCGLFRITWGYWADAGKPTI-NG----LSPDAPDAYSSCTVDPYCAAQTVQNY--- 422
           C G+T  L+  TW  + + G   + NG    L   A   Y    VD  C   T+  Y   
Sbjct: 11  CNGQTISLYGTTWSVYQEGGVDKVCNGQTISLYGTAWSVYQEGGVDKVCNGWTISLYGTA 70

Query: 423 ---MRRFGQD--CNGDGVVNCYDYMAIHKKGGYG--CXGE 521
               +  G D  CNG  +       +++++GG    C G+
Sbjct: 71  WTVFQEGGVDKVCNGQTISLYGTAWSVYQEGGVDMVCNGQ 110



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
 Frame = +3

Query: 267 CEGETCGLFRITWGYWADAGKPTI-NG----LSPDAPDAYSSCTVDPYCAAQTVQNY 422
           C G T  L+  TW  + + G   + NG    L   A   Y    VD  C  QT+  Y
Sbjct: 347 CNGWTISLYGTTWSVYQEGGVDKVCNGQTISLYGTAWSVYQDGGVDKVCNGQTISLY 403


>SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 300 TWGYWADAGKPTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMRRFGQ 440
           TW +W+  G P ++  S  A  + S  T  P+ A +  QN +   G+
Sbjct: 38  TWFFWSSRGYPVVSLASQPASQSVSRATPRPHTAPKWRQNTITAQGK 84


>SB_56756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = -2

Query: 291 RGRTSHPRTADLACIQR*PGKCSRDTPPSQGGVPKHRRNRLRQPTATHKT*SQPKPL 121
           R R S P +  L    R   K S   PP Q G+ K R + L  P     T    +PL
Sbjct: 191 RSRLSAPISPRLLGRHRTEQKYSTPAPPHQQGIRKERSSSLNSPAKQFDTLYDEQPL 247


>SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12)
          Length = 85

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 417 NYMRRFGQDCNGDGVVNCYDYMAIHKKG 500
           N++  FG   NG G  NC  ++AI+ KG
Sbjct: 50  NHVTSFGSLGNGRGQFNCPSHVAINSKG 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,506,445
Number of Sequences: 59808
Number of extensions: 530773
Number of successful extensions: 1269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)