Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P17
         (879 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71420.1 68414.m08249 pentatricopeptide (PPR) repeat-containi...    29   4.1  
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    28   7.2  
At5g24040.1 68418.m02824 F-box family protein similar to unknown...    28   7.2  
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica...    28   9.5  

>At1g71420.1 68414.m08249 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 745

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
 Frame = +3

Query: 534 FYLAPYE-----AYPQYF-VNMEVKNKMDYVKMMDGCLDEKICYNYGIIKXNEQFVMYAN 695
           FY AP E     AY   F    E +N +D + +    L    CY+  +I  N    MYA 
Sbjct: 49  FYSAPVELQSQQAYAALFQACAEQRNLLDGINLHHHMLSHPYCYSQNVILANFLINMYAK 108

Query: 696 YSNSLXLPQ 722
             N L   Q
Sbjct: 109 CGNILYARQ 117


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 257 IEASKDCYTNMKAYENFMMMYKVGFLPKNLEFSIF---YEKMR--EEAIALFK 400
           I  +K C    KA E F  MYK G +P  + +S     Y K    EE ++L++
Sbjct: 228 ITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYE 280


>At5g24040.1 68418.m02824 F-box family protein similar to unknown
           protein (gb|AAD22308.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 373

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 442 CFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKES 326
           C+ E F++F  I + E+R GF      K+ E+ ILGK S
Sbjct: 137 CYSEWFELFECISKCEERIGFMGLNREKN-EYMILGKLS 174


>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
           to auxin response factor 8 GI:4104931 from [Arabidopsis
           thaliana]
          Length = 811

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +2

Query: 119 STVPEFKTTPVDAAFVEKQKKILSLFYNVNEISYEAEYYKVAQDFNIEASKDC--YTNMK 292
           STVP F ++  DA     +   +SL     +  ++   Y   QD   E         +  
Sbjct: 652 STVPRFASSSGDA-----EASPMSL----TDSGFQNSLYSCMQDTTHELLHGAGQINSSN 702

Query: 293 AYENFMMMYKVGFLPKNLEFSIF--YEKMREEAIALFKL 403
             +NF+ +YK G + ++L+ S F  Y ++REE   +F +
Sbjct: 703 QTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAI 741


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,122,646
Number of Sequences: 28952
Number of extensions: 302375
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)