Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P16
         (871 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38700.1 68415.m04753 mevalonate diphosphate decarboxylase (M...    28   9.3  

>At2g38700.1 68415.m04753 mevalonate diphosphate decarboxylase
           (MVD1) identical to mevalonate diphosphate decarboxylase
           [Arabidopsis thaliana] gi|2288887|emb|CAA74700
          Length = 412

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/88 (26%), Positives = 38/88 (43%)
 Frame = -2

Query: 363 KDREFQILGKEXDXVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVEKRQX 184
           K++  +I  K+ + +H H   +  H      AGL     G   ++  +A L+NV E    
Sbjct: 96  KEKGIKIAKKDWEKLHLH---IASHNNFPTAAGLASSAAGFACLVFALAKLMNVNEDPSQ 152

Query: 183 LLXLFDERSVNRCRFEFRYGATESEGNK 100
           L  +  + S + CR  F      + GNK
Sbjct: 153 LSAIARQGSGSACRSLFGGFVKWNMGNK 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,734,495
Number of Sequences: 28952
Number of extensions: 192674
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)