Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P15
         (908 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)               28   9.1  

>SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -2

Query: 841 KRNVRDFRXLCPCIPRPCGEPEGSTVLD--SVKALLYSRL*M*NKTSLSYLAGCRYH 677
           K  V +FR     I +PC  P  +TV+   S     +  L    +T  S L GC YH
Sbjct: 185 KLPVINFRLKLGTIKQPCHRPVAATVITYYSQNRAKFDMLAKAVRTIYSLLVGCTYH 241


>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
          Length = 1631

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
 Frame = +3

Query: 369 SQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKGDDGRPAYGDGXDKTSPRVSWKLIALWE 548
           S  +S+L  P T L++C   ++SL       K ++ R  Y     K     +WK  +LWE
Sbjct: 485 SASASELMLP-TGLAVCAEKSLSL-----RIKSENSREFYQSLKGKLQ---TWKCKSLWE 535

Query: 549 ------NNKVYFKILNTERNQYLVLGVG 614
                 N+K Y +    E  Q LV+G G
Sbjct: 536 LLDNRANHKDYDRGTTCEHLQVLVIGAG 563


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,918,167
Number of Sequences: 59808
Number of extensions: 407208
Number of successful extensions: 1051
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)