Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P15
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.7  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   1.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.9  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 92  CSFGAXRPXCDPRTNAKLKEGPSS 21
           C F   +  CD RT    +E P S
Sbjct: 370 CKFAEIKEKCDRRTGKTTEENPKS 393


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 92  CSFGAXRPXCDPRTNAKLKEGPSS 21
           C F   +  CD RT    +E P S
Sbjct: 81  CKFAEIKEKCDRRTGKTTEENPKS 104


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
 Frame = +3

Query: 567 KILNTERNQYLVL-------GVGTNWNGDHMAF---GVNSVDSFRAQWYLQPAKYDNDVL 716
           ++ NT+RN+YL+         +  + N +H+ F   G N  D  R     + A +DN   
Sbjct: 366 RVNNTQRNEYLLALSDRNQNVLNNDLNLEHVNFQILGANVNDLIRNS---RCANFDNQDN 422

Query: 717 FYIYNREYSKALTLSRTVEPSGSPHGLGIHGQSXRKSR 830
            + YN  +++A   S++   + + H    H  S   +R
Sbjct: 423 NH-YNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNNR 459


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 534 IALWEN--NKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDS 665
           IA W +  N++    L+TE+    +    T W   HM+   +++DS
Sbjct: 177 IASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSESTIDS 222


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = +2

Query: 317 TPINFGSRXSKDIVRDCFPVEFRLIFAENAIKLMYK 424
           +P N  +   + I++D FP++           ++YK
Sbjct: 48  SPFNIDTPNRQKILKDGFPIKCGTFLGSGGFGIVYK 83


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -1

Query: 92  CSFGAXRPXCDPRTNAKLKEGPSS 21
           C F   +  CD R     +E P S
Sbjct: 370 CKFADIKEKCDRRNGKTTEENPKS 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,429
Number of Sequences: 438
Number of extensions: 3894
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)