Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P15
         (908 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    31   1.4  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    31   1.4  
At5g56690.1 68418.m07076 F-box family protein contains F-box dom...    30   2.4  

>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 345 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 437
           PR  +G  S L SDL  P+T +  CTS  V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +2

Query: 56   LGHTQASXLQSCSPLXXFXVFSWHLCMLQLPTSLTXFWRXSFTIASSSPITXV 214
            LG   ++ +Q C  +      +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1065 LGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 549 NNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQWYLQPAKYDNDVLFYIY 728
           N+K ++K    +  +YL +    N       F +NS+++FR +WY    + D D L  I+
Sbjct: 333 NSKSFYK---EKIGEYLPVSWSKNQGSVPKCF-LNSLETFRVKWYYSEEQEDRDFLSLIF 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,922,673
Number of Sequences: 28952
Number of extensions: 279681
Number of successful extensions: 745
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)