Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P14
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    27   4.9  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   4.9  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    26   8.5  

>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 787 GVIQRVYAVLEASVHHALRI*GKSSHTXNLQTPSYKTASLVPXF 656
           GV+  VY +  +S      I    S + NLQ PS  TA+  P +
Sbjct: 354 GVLSEVYDISASSTVTLKDILNHYSKSYNLQNPSVSTAAGTPLY 397


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 489 YKDVLYFSTYPSHI-LYTFSNGQITRFPDL 575
           Y + LYF T    + LY FSN Q+   P+L
Sbjct: 25  YNNHLYFGTEGGDVFLYNFSNFQLNESPEL 54


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 330 TTIEGVNNGFAQTVDPTTQTVYIGGSDGL 416
           TTI   +     TVDP+ + VY+G   G+
Sbjct: 213 TTIALPSTPSCMTVDPSERVVYVGNEKGI 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,049
Number of Sequences: 5004
Number of extensions: 62453
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)