Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P14
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0946 - 22798055-22798742,22799746-22799810                       30   2.2  
04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339           30   2.9  
11_06_0511 - 24434007-24436814                                         29   5.1  
06_01_1072 - 8756386-8756706                                           28   9.0  
03_05_0757 + 27478425-27479016,27479202-27479277,27479366-274794...    28   9.0  

>07_03_0946 - 22798055-22798742,22799746-22799810
          Length = 250

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 411 RRFRLCTRSAWLGPQSARSHYSRPRWW*-TSSCPNYILPLRS 289
           RR  +  R++ L   S     S+PRWW  T +C  Y+LPL +
Sbjct: 71  RRLEVGCRASSLASFSYPELTSKPRWWWRTVACVPYLLPLHN 112


>04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339
          Length = 503

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 420 DIDRRFRLCTRSAWLGPQSARSHYSRPRWW*TSSCPNYI 304
           D+D     C R    GP+  RS+ S PR W   +CP  I
Sbjct: 465 DLDLDHSNCLRHRSGGPELNRSNKSPPRIWLRQACPRKI 503


>11_06_0511 - 24434007-24436814
          Length = 935

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 314 QIISCRCGAVL-VVVYAITEVEVIGAVIHGQKVRAVQIFVEXLXFVRHPVDFDA 156
           ++ SCR   V+  +  +I++ E  GA+ HG K+  +   V  L    +P D  A
Sbjct: 535 RVASCRMPIVVHELAVSISQKEEFGAICHGGKLAEMDTNVRCLFISENPEDIGA 588


>06_01_1072 - 8756386-8756706
          Length = 106

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 413 TVASAYVHGLRGWVHSLREAIIHALDGGKLLRV 315
           TV +A   GL GWV + R+  + AL  G   RV
Sbjct: 34  TVETARALGLAGWVRNRRDGTVEALLSGDPARV 66


>03_05_0757 +
           27478425-27479016,27479202-27479277,27479366-27479481,
           27481043-27481608
          Length = 449

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 444 LFWYPCRXDIDRRFRLCTRSAWL 376
           LFW P R  +   F+L T SAW+
Sbjct: 244 LFWIPERRSLPTAFKLFTGSAWM 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,735,048
Number of Sequences: 37544
Number of extensions: 413581
Number of successful extensions: 977
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)