Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P14
         (912 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01910.2 68414.m00109 anion-transporting ATPase, putative sim...    35   0.065
At1g01910.1 68414.m00108 anion-transporting ATPase, putative sim...    35   0.065
At5g21482.1 68418.m02536 cytokinin oxidase, putative (CKX5) cont...    30   1.9  
At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL...    29   5.7  
At1g13880.1 68414.m01629 ELM2 domain-containing protein contains...    29   5.7  
At4g23496.1 68417.m03386 expressed protein                             28   7.5  
At5g03370.1 68418.m00290 acylphosphatase family contains Pfam PF...    28   9.9  
At3g51430.1 68416.m05633 strictosidine synthase, putative (YLS2)...    28   9.9  

>At1g01910.2 68414.m00109 anion-transporting ATPase, putative
           similar to SP|O43681 Arsenical pump-driving ATPase (EC
           3.6.3.16) (Arsenite-translocating ATPase) (Arsenical
           resistance ATPase) (Arsenite-transporting ATPase) (ARSA)
           (ASNA-I) {Homo sapiens}; contains Pfam profile PF02374:
           Anion-transporting ATPase
          Length = 353

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 318 TKKFTTIEGVNNGFAQTVDPTTQTVYIGGSDGL 416
           TK  T ++G +N FA  VDPT +T  + G+DG+
Sbjct: 70  TKSPTLVQGFSNLFAMEVDPTVETDDMAGTDGM 102


>At1g01910.1 68414.m00108 anion-transporting ATPase, putative
           similar to SP|O43681 Arsenical pump-driving ATPase (EC
           3.6.3.16) (Arsenite-translocating ATPase) (Arsenical
           resistance ATPase) (Arsenite-transporting ATPase) (ARSA)
           (ASNA-I) {Homo sapiens}; contains Pfam profile PF02374:
           Anion-transporting ATPase
          Length = 353

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 318 TKKFTTIEGVNNGFAQTVDPTTQTVYIGGSDGL 416
           TK  T ++G +N FA  VDPT +T  + G+DG+
Sbjct: 70  TKSPTLVQGFSNLFAMEVDPTVETDDMAGTDGM 102


>At5g21482.1 68418.m02536 cytokinin oxidase, putative (CKX5)
           contains Pfam profile: PF01565 FAD binding domain;
           identical to cytokinin oxidase (CKX5) [Arabidopsis
           thaliana] gi|11120514|gb|AAG30908; similar to
           Swiss-Prot:Q9LTS3 cytokinin oxidase 3 precursor (CKO
           3)[Arabidopsis thaliana]
          Length = 524

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 680 FVRXCLKISGVRGFALNAQGVVHACFQNGV 769
           FV  C K+S V       Q +VH C +NG+
Sbjct: 445 FVPPCAKVSSVEKMVAQNQEIVHWCVKNGI 474


>At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL-1
           [Homo sapiens] GI:1381142
          Length = 374

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 369 QSARSHYSRP--RWW*TSSCPNYILPLRSC 286
           Q   S+YSR   RW    SCP+Y++ +  C
Sbjct: 204 QDTASYYSRKASRWTEEDSCPDYMIKVEEC 233


>At1g13880.1 68414.m01629 ELM2 domain-containing protein contains
           Pfam profile: PF01448 ELM2 domain
          Length = 424

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
 Frame = -1

Query: 444 LFWYPCRXDIDRRFRLCTRSAWLGPQSARSHYSRPRWW*TSSCPNYILPLRSCPRRCLCY 265
           L+ Y C  ++D+ F      +W+   +  S           S  ++  P    P R +C 
Sbjct: 55  LYGYKCEDNVDKGFETNAPFSWI--TTGLSEEDSQSGATIQSTISHESPESDIPWRPVCS 112

Query: 264 N*SRGHWC-CNPRSEGKGGPDFRRAXP 187
               G+WC  +PR     G D++   P
Sbjct: 113 GEEDGYWCPISPRKTVPIGSDYQADIP 139


>At4g23496.1 68417.m03386 expressed protein
          Length = 99

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 264 YSIDN-DEDSSATARYNLDTKKFTTIEGVNNGFAQTVDPTTQTVYIGGSDGLYXY 425
           Y +D+ +ED  A  +  +    +  ++G N+G   T  PTT+   + G      Y
Sbjct: 40  YGVDSTEEDHEADQKPKISNNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGY 94


>At5g03370.1 68418.m00290 acylphosphatase family contains Pfam
           PF00708: Acylphosphatase
          Length = 171

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 413 TVASAYVHGLRGWVHSLREAIIHALDGGKLLRVQIISCRC 294
           TV +A   G++GWV + R+  + AL  G    V  +  RC
Sbjct: 101 TVENAEQLGIKGWVRNRRDGSVEALFSGPPEAVDEMHQRC 140


>At3g51430.1 68416.m05633 strictosidine synthase, putative (YLS2)
           similar to hemomucin [Drosophila
           melanogaster][GI:1280434], strictosidine synthase
           [Rauvolfia serpentina][SP|P15324]; contains
           strictosidine synthase domain PF03088; identical to cDNA
           YLS2 mRNA for strictosidine synthase-like protein
           GI:13122281
          Length = 371

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 288 SSATARYNLDTKKFTTIEGVNNGFAQTVDPTTQTVYI 398
           + A+ +Y L   KF  +EG  +G   + DPTT+   +
Sbjct: 174 TDASYKYTLHQVKFDILEGKPHGRLMSFDPTTRVTRV 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,649,911
Number of Sequences: 28952
Number of extensions: 328217
Number of successful extensions: 808
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)