Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P13
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    98   1e-21
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    94   2e-20
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    93   4e-20
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    40   6e-04
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    38   0.001
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    38   0.003
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    29   0.91 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   6.4  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 47/104 (45%), Positives = 68/104 (65%)
 Frame = +3

Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
           L  +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LI+AG E L+++P G
Sbjct: 9   LLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTG 68

Query: 336 GGXXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
           G                 E  E  KE      ESD+DMGFGLFD
Sbjct: 69  GAASAAPAAAAGGAAPAAE--EAAKEEAKEEEESDEDMGFGLFD 110


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 46/104 (44%), Positives = 68/104 (65%)
 Frame = +3

Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
           L  +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LI+AG E LS++P  
Sbjct: 9   LLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSA 68

Query: 336 GGXXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
           G                   +E  +E      ESD+DMGFGLFD
Sbjct: 69  GAVATPAAGGAAGAEATSAAEEAKEE--EAAEESDEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 93.5 bits (222), Expect = 4e-20
 Identities = 45/104 (43%), Positives = 68/104 (65%)
 Frame = +3

Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
           L  +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LI+AG E L+++P G
Sbjct: 9   LLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSG 68

Query: 336 GGXXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
           G                 E  E  KE      ESD+DMGFGLFD
Sbjct: 69  GAAAAAAPAAAGGAAPAAE--EAAKEEAKEEEESDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 267 LNGKDVEQLI-SAGREXLSSMPVGGGXXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDD 443
           L GKD+++L+ + G    +S P   G               EEKKE  KE      ESD+
Sbjct: 50  LEGKDLKELLLNIGSAGAASAPTAAGAGAAAPAEAAE----EEKKEEAKEE----EESDE 101

Query: 444 DMGFGLFD 467
           DMGFGLFD
Sbjct: 102 DMGFGLFD 109


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = +3

Query: 201 EKILS-SVGIEADAEKLKKVI--TELNGKDVEQLISAGREXLSSMPVGGGXXXXXXXXXX 371
           +K+LS +     D E +   I    L GKD+++L+        + PV GG          
Sbjct: 25  DKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADGE 84

Query: 372 XXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
                EEK+E  +E      ESD+DMGFGLFD
Sbjct: 85  APA--EEKEEAKEE-----EESDEDMGFGLFD 109


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = +3

Query: 201 EKILS-SVGIEADAEKLKKVI--TELNGKDVEQLISAGREXLSSMPVGGGXXXXXXXXXX 371
           +K+LS +     D E +   I    L GKD+++L+       ++ P  GG          
Sbjct: 25  DKLLSLTKAANVDVEPIWATIFAKALEGKDLKELL-LNIGSAAAAPAAGGAGAPAAAAGG 83

Query: 372 XXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
                E+K+E  +E      ESD+DMGFGLFD
Sbjct: 84  EAAAEEQKEEAKEE-----EESDEDMGFGLFD 110


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 432 ESDDDMGFGLFD 467
           ESD+DMGFGLFD
Sbjct: 301 ESDEDMGFGLFD 312


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = -1

Query: 268 SSVITFLSFSASASIPTELRIFSTSAAAGVXLPPST 161
           SSV T LS SAS+SIP      S+SAAA   L  S+
Sbjct: 8   SSVDTSLSSSASSSIPAS----SSSAAASTSLSSSS 39


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 198  VEKILSSVGIEADAEKLKKVITELNG 275
            V++I   VG+E D+E  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,079
Number of Sequences: 5004
Number of extensions: 24635
Number of successful extensions: 83
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)