Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_P13
(910 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 92 6e-19
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 81 2e-15
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 75 1e-13
07_01_1001 - 8460467-8460799 59 4e-09
07_03_0321 + 16757414-16757743 55 9e-08
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 34 0.14
01_06_0098 - 26416768-26416998 32 0.72
06_03_1287 - 29011710-29011871,29012209-29012272,29012556-290126... 30 2.2
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 91.9 bits (218), Expect = 6e-19
Identities = 47/105 (44%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Frame = +3
Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
LAVLGG +P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++I+AGRE +S+P G
Sbjct: 9 LAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSG 68
Query: 336 GGXXXXXXXXXXXXXXXEEKKEXXK-EXXXXXSESDDDMGFGLFD 467
GG +E K E ESDDDMGF LFD
Sbjct: 69 GGGGIAVAAPTAAGGGAAPAEEAKKEEKVEEKEESDDDMGFSLFD 113
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 80.6 bits (190), Expect = 2e-15
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Frame = +3
Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
LA L G P+A D+ IL SVG E D K++ ++++L GKD+ ++I++GRE +S+P G
Sbjct: 202 LATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVPCG 261
Query: 336 GGXXXXXXXXXXXXXXXEEKKEXXK-EXXXXXSESDDDMGFGLFD 467
GG + E K E ESDDDMGF LFD
Sbjct: 262 GGGVAVAAAAPAAGGGAAPQSEAKKEEKVEEKEESDDDMGFSLFD 306
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 74.5 bits (175), Expect = 1e-13
Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Frame = +3
Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
+A L G +P A D+ IL SVG E D K++ ++++++GKD+ +LI+ GRE +S+P G
Sbjct: 9 MAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASVPSG 68
Query: 336 GG-----XXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
GG E KKE E ESDDDMGF LFD
Sbjct: 69 GGGVAVAAAAPAAGGAGGAPAAEAKKEDKVE---EKEESDDDMGFSLFD 114
>07_01_1001 - 8460467-8460799
Length = 110
Score = 59.3 bits (137), Expect = 4e-09
Identities = 33/104 (31%), Positives = 52/104 (50%)
Frame = +3
Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
+A +GG +P DV IL +VG + D +KL + ++ GKD+ ++++AG E L+ VG
Sbjct: 9 MATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLAFGGVG 68
Query: 336 GGXXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
E++KE K E +DD+ F LFD
Sbjct: 69 AAPAAAATAGGGAAAAGEKEKEEEK----VEEEEEDDIVFSLFD 108
>07_03_0321 + 16757414-16757743
Length = 109
Score = 54.8 bits (126), Expect = 9e-08
Identities = 32/104 (30%), Positives = 50/104 (48%)
Frame = +3
Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
+A +GG +P DV IL +VG + D +KL + ++ GKD+ ++++AG E L+
Sbjct: 9 MATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLAFGAAP 68
Query: 336 GGXXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
EE+K KE E +DD+ F LFD
Sbjct: 69 AAAAATAGGAAAAGEKEEEEKVEEKE-----KEGEDDIVFSLFD 107
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 34.3 bits (75), Expect = 0.14
Identities = 24/67 (35%), Positives = 28/67 (41%)
Frame = +3
Query: 267 LNGKDVEQLISAGREXLSSMPVGGGXXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDD 446
L + V+ LI + + PV EEKKE KE ESDDD
Sbjct: 50 LEHRSVDDLILSVGSGGGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAKE------ESDDD 103
Query: 447 MGFGLFD 467
MGF LFD
Sbjct: 104 MGFSLFD 110
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.9 bits (69), Expect = 0.72
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 183 PAAADVEKILSSVGIEADAEKLKKVITELNGKD 281
P V KI+ +V IEAD+ + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>06_03_1287 -
29011710-29011871,29012209-29012272,29012556-29012611,
29012787-29012984
Length = 159
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +3
Query: 387 EEKKEXXKEXXXXXSESDDDMGFGLFD 467
EEKKE KE ES+DD+GF LFD
Sbjct: 139 EEKKEEEKE------ESEDDLGFSLFD 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,230,815
Number of Sequences: 37544
Number of extensions: 182397
Number of successful extensions: 431
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -