Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_P13
(910 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 83 2e-16
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 83 2e-16
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 83 3e-16
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 83 3e-16
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 83 3e-16
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 81 1e-15
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 61 1e-09
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 60 3e-09
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 30 1.8
At1g67140.1 68414.m07638 expressed protein 30 2.4
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 28 9.8
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 28 9.8
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 83.4 bits (197), Expect = 2e-16
Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Frame = +3
Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
LAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LI++GRE L+S+P G
Sbjct: 9 LAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSG 68
Query: 336 GG--XXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
GG EKKE KE ESDDDMGF LF+
Sbjct: 69 GGVAVSAAPSSGGGGAAAPAEKKEAKKE---EKEESDDDMGFSLFE 111
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 83.4 bits (197), Expect = 2e-16
Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Frame = +3
Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
LAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LI++GRE L+S+P G
Sbjct: 9 LAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSG 68
Query: 336 GG--XXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
GG EKKE KE ESDDDMGF LF+
Sbjct: 69 GGVAVSAAPSSGGGGAAAPAEKKEAKKE---EKEESDDDMGFSLFE 111
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 82.6 bits (195), Expect = 3e-16
Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 6/110 (5%)
Frame = +3
Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
LAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LI+AGRE L+S+P G
Sbjct: 9 LAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSG 68
Query: 336 GG------XXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
GG E KKE KE ESDDDMGF LF+
Sbjct: 69 GGGGVAVASATSGGGGGGGASAAESKKEEKKE---EKEESDDDMGFSLFE 115
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 82.6 bits (195), Expect = 3e-16
Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 6/110 (5%)
Frame = +3
Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
LAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LI+AGRE L+S+P G
Sbjct: 9 LAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSG 68
Query: 336 GG------XXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
GG E KKE KE ESDDDMGF LF+
Sbjct: 69 GGGGVAVASATSGGGGGGGASAAESKKEEKKE---EKEESDDDMGFSLFE 115
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 82.6 bits (195), Expect = 3e-16
Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 6/110 (5%)
Frame = +3
Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
LAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LI+AGRE L+S+P G
Sbjct: 9 LAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSG 68
Query: 336 GG------XXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
GG E KKE KE ESDDDMGF LF+
Sbjct: 69 GGGGVAVASATSGGGGGGGASAAESKKEEKKE---EKEESDDDMGFSLFE 115
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 80.6 bits (190), Expect = 1e-15
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Frame = +3
Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
LAVL GK +P D++ IL SVG E + +++ ++ E+ GKD+ +LI+AGRE L+S+P G
Sbjct: 9 LAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSG 68
Query: 336 GG------XXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDDMGFGLFD 467
GG E KKE KE ESDDDMGF LF+
Sbjct: 69 GGGGVAVASATSGGGGGGGAPAAESKKEEKKE---EKEESDDDMGFSLFE 115
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 60.9 bits (141), Expect = 1e-09
Identities = 39/107 (36%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Frame = +3
Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
LA LGG P + D++KIL SVG E D K+ + + + DV +LI+AGRE +S++ G
Sbjct: 9 LAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKMSALSSG 68
Query: 336 GG--XXXXXXXXXXXXXXXEEKKEXXKEXXXXXSESDDDMG-FGLFD 467
G E E K+ ES DD G GLFD
Sbjct: 69 GPAVAMVAGGGGGGAASAAEPVAESKKKVEEVKDESSDDAGMMGLFD 115
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 59.7 bits (138), Expect = 3e-09
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Frame = +3
Query: 156 LAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLISAGREXLSSMPVG 335
LA L G P+ AD++KI+ SVG E D EK+ + + +DV +LI+ GRE ++++ G
Sbjct: 9 LAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKMAALSSG 68
Query: 336 GGXXXXXXXXXXXXXXXEEKKE-XXKEXXXXXSESDDDMG-FGLFD 467
GG E K+ ES+DD G LFD
Sbjct: 69 GGAVAVASGGGGGAAPAAEPASVESKKKEEEKEESEDDGGMMSLFD 114
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +3
Query: 141 WPRI-YLAVLGGKXTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVE----QLISAG 305
W R Y+ + T A E++L G+E +K+++TE NG+ +E +L+++G
Sbjct: 306 WNRTDYVRIQANGLTSGGA--EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASG 363
Query: 306 REXLSSMP 329
+ L P
Sbjct: 364 KSSLPPSP 371
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -3
Query: 317 QLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVS 192
Q L++GR L+++L L++LS SF D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 387 EEKKEXXKEXXXXXSESDDDMGFGLFD 467
EEKK+ E ESD D+GFGLFD
Sbjct: 93 EEKKDEPAE------ESDGDLGFGLFD 113
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 387 EEKKEXXKEXXXXXSESDDDMGFGLFD 467
EEKK+ E ESD D+GFGLFD
Sbjct: 93 EEKKDEPAE------ESDGDLGFGLFD 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,092,144
Number of Sequences: 28952
Number of extensions: 136425
Number of successful extensions: 313
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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