Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P12
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...   175   5e-44
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...   159   3e-39

>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score =  175 bits (425), Expect = 5e-44
 Identities = 90/141 (63%), Positives = 101/141 (71%), Gaps = 21/141 (14%)
 Frame = +1

Query: 166 LXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA---------------------K 282
           L M  + L++L           GLKRKPMAL+KKLR+A                     K
Sbjct: 270 LDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSNFEGTVFRLGFYEAGSYFVK 329

Query: 283 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 462
           K+AP  EKPE V+THLRNMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YK
Sbjct: 330 KDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYK 389

Query: 463 PVKHGRPGIGATHSSRFIPLK 525
           PVKHGRPGIGATHSSRFIPLK
Sbjct: 390 PVKHGRPGIGATHSSRFIPLK 410



 Score = 35.9 bits (79), Expect = 0.045
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +3

Query: 111 KKRIFRKFTYRGVDLDQLL 167
           KKR FRK++YRGVDLD LL
Sbjct: 252 KKRTFRKYSYRGVDLDALL 270


>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score =  159 bits (386), Expect = 3e-39
 Identities = 73/103 (70%), Positives = 84/103 (81%)
 Frame = +1

Query: 166 LXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 345
           L M  + L++L           GLKRKPMAL+KKLR+AKK+AP  EKPE V+THLRNMII
Sbjct: 142 LDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMII 201

Query: 346 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 474
           VPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKH
Sbjct: 202 VPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 244



 Score = 35.9 bits (79), Expect = 0.045
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +3

Query: 111 KKRIFRKFTYRGVDLDQLL 167
           KKR FRK++YRGVDLD LL
Sbjct: 124 KKRTFRKYSYRGVDLDALL 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,676,438
Number of Sequences: 37544
Number of extensions: 283224
Number of successful extensions: 628
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)