Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P12
         (916 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)             202   2e-52
SB_9416| Best HMM Match : WD40 (HMM E-Value=0)                         28   9.2  

>SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score =  202 bits (494), Expect = 2e-52
 Identities = 93/120 (77%), Positives = 105/120 (87%)
 Frame = +1

Query: 166 LXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 345
           L + +EQLMEL+          GLKRKP+AL+K+LR+AKKEA P EKPE+VKTHLRNMII
Sbjct: 30  LDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRKAKKEAAPMEKPEVVKTHLRNMII 89

Query: 346 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 525
           VPEM+GS+VG+YNGKTF QVEIKPEMIGHYLGEFS+TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 90  VPEMIGSVVGVYNGKTFTQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 149



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = +3

Query: 96  DETLKKKRIFRKFTYRGVDLDQLL 167
           D  +K+KR FRKFTYRGVDLDQLL
Sbjct: 7   DAQIKRKRTFRKFTYRGVDLDQLL 30


>SB_9416| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 700

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 208 GHALIP*VAHWAYXRS*SRSTPR*VNFLKIRFFLRVSSTSSHVSL 74
           G+ L   V  W    +  R+TP+   F KI FFL+  STSS  +L
Sbjct: 557 GYLLAETVPQWVVDVTVKRATPK---FHKIAFFLQPHSTSSSKTL 598


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,289,821
Number of Sequences: 59808
Number of extensions: 304904
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)