Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P12
         (916 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo...   192   3e-49
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro...   192   3e-49
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo...   192   4e-49
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo...   185   3e-47
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)           184   1e-46
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative          143   2e-34
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    47   2e-05
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim...    36   0.028
At3g22380.1 68416.m02825 expressed protein                             29   4.3  
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ...    29   5.7  

>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  192 bits (468), Expect = 3e-49
 Identities = 87/120 (72%), Positives = 100/120 (83%)
 Frame = +1

Query: 166 LXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 345
           L M  + L++L           GL RKPMAL+KKLR+AK+EAP  EKPE V+THLRNMII
Sbjct: 33  LDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMII 92

Query: 346 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 525
           VPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 93  VPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152



 Score = 32.7 bits (71), Expect = 0.35
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +3

Query: 111 KKRIFRKFTYRGVDLDQLL 167
           KKR F+KF ++GVDLD LL
Sbjct: 15  KKRTFKKFAFKGVDLDALL 33


>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
           similarity to Oryza 40S ribosomal protein S15. ESTs
           gb|R29788,gb|ATTS0365 come from this gene
          Length = 152

 Score =  192 bits (468), Expect = 3e-49
 Identities = 87/120 (72%), Positives = 100/120 (83%)
 Frame = +1

Query: 166 LXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMII 345
           L M  + L++L           GL RKPMAL+KKLR+AK+EAP  EKPE V+THLRNMII
Sbjct: 33  LDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMII 92

Query: 346 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 525
           VPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 93  VPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152



 Score = 32.7 bits (71), Expect = 0.35
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +3

Query: 111 KKRIFRKFTYRGVDLDQLL 167
           KKR F+KF ++GVDLD LL
Sbjct: 15  KKRTFKKFAFKGVDLDALL 33


>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  192 bits (467), Expect = 4e-49
 Identities = 88/140 (62%), Positives = 108/140 (77%)
 Frame = +1

Query: 106 SRKSVFSGSSLTGELISISSLXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 285
           ++K  F   S  G  +  + L MP + L+EL           GL RKPMAL+KKLR+AK 
Sbjct: 14  AKKRTFKKFSFKGVDLD-ALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72

Query: 286 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 465
           +AP  EKPE+V+THLRNM+I+PEM+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKP
Sbjct: 73  DAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKP 132

Query: 466 VKHGRPGIGATHSSRFIPLK 525
           V+HG+PG GATHSSRFIPLK
Sbjct: 133 VRHGKPGHGATHSSRFIPLK 152



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +3

Query: 105 LKKKRIFRKFTYRGVDLDQLL 167
           L KKR F+KF+++GVDLD LL
Sbjct: 13  LAKKRTFKKFSFKGVDLDALL 33


>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 150

 Score =  185 bits (451), Expect = 3e-47
 Identities = 88/139 (63%), Positives = 105/139 (75%)
 Frame = +1

Query: 109 RKSVFSGSSLTGELISISSLXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKE 288
           +K  F   S  G  +  + L M  + L++L           GL RKPMAL+KKLR+AK E
Sbjct: 13  KKRTFKKFSFRGVDLD-ALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIE 71

Query: 289 APPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPV 468
           AP  EKP  V+THLRNMIIVPEM+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPV
Sbjct: 72  APAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 131

Query: 469 KHGRPGIGATHSSRFIPLK 525
           KHGRPG+GAT+SSRFIPLK
Sbjct: 132 KHGRPGVGATNSSRFIPLK 150


>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 
          Length = 149

 Score =  184 bits (447), Expect = 1e-46
 Identities = 89/139 (64%), Positives = 104/139 (74%)
 Frame = +1

Query: 109 RKSVFSGSSLTGELISISSLXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKE 288
           +K  F   S  G  +  + L M  E L++            GL RKPMAL+KKLR+AK E
Sbjct: 12  KKRTFKKFSFRGVDLD-ALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKME 70

Query: 289 APPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPV 468
           AP  EKP  V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPV
Sbjct: 71  APAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 130

Query: 469 KHGRPGIGATHSSRFIPLK 525
           KHGRPG+GAT+SSRFIPLK
Sbjct: 131 KHGRPGVGATNSSRFIPLK 149


>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
          Length = 160

 Score =  143 bits (346), Expect = 2e-34
 Identities = 76/146 (52%), Positives = 96/146 (65%), Gaps = 6/146 (4%)
 Frame = +1

Query: 106 SRKSVFSGSSLTGELISISSLXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 285
           ++K  F   S  G  +  + L M N  L +L +         GLK++P+ L+KKLRRAKK
Sbjct: 16  TKKRTFKKFSFRGFNVD-ALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKK 74

Query: 286 EAPPNEK--PEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTY 459
           EA    K  PE+VKTHLRNMIIVPEM+GS+VG++NGK FN++ IKPEMIGHYL EFS+T 
Sbjct: 75  EASDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTC 134

Query: 460 KPVKHGRPGIGA----THSSRFIPLK 525
           K V H RP I        S+RFIPL+
Sbjct: 135 KKVNHHRPRICGCCCFRRSTRFIPLR 160


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 23/50 (46%), Positives = 29/50 (58%)
 Frame = +1

Query: 331 RNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 480
           R   I+PE V S V IYNGKT  + +I    +GH  GEF+ T K  KH +
Sbjct: 161 RRSTILPEYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210


>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
           similar to SP|Q08112 40S ribosomal protein S15
           {Arabidopsis thaliana}
          Length = 70

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +3

Query: 111 KKRIFRKFTYRGVDLDQLL 167
           KKRIF+KF++RGVDLD LL
Sbjct: 12  KKRIFKKFSFRGVDLDALL 30


>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 264 EAASRQERGSSE*EARDREDSLEKHDHRSRD---GRFNCRHLQRK 389
           EAA  ++RG S  + RDRE   ++   R RD    R N R  +R+
Sbjct: 43  EAARLRDRGGSNKKDRDRERDRDRERERERDRERDRLNSRSKRRR 87


>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
           significant, 2 weak WD-40 repeats (PF00400); similar to
           transducin beta-like 1 protein.(SP:O60907) [Homo
           sapiens]
          Length = 467

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 409 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 510
           +KPE+ G Y  E    Y P+K   PG  ++ SSR
Sbjct: 20  MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,837,412
Number of Sequences: 28952
Number of extensions: 224875
Number of successful extensions: 565
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)